Detailed information
Bioinformatically predicted
Overview
| Name | pilA/pilAI | Type | Machinery gene |
| Locus tag | AM489_RS25610 | Genome accession | NZ_CP029745 |
| Coordinates | 5368007..5368474 (-) | Length | 155 a.a. |
| NCBI ID | WP_110590994.1 | Uniprot ID | - |
| Organism | Pseudomonas aeruginosa strain AR_0110 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 5363007..5373474
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AM489_RS25595 (AM489_25595) | nadC | 5365507..5366355 (+) | 849 | WP_003161760.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| AM489_RS25605 (AM489_25605) | - | 5366536..5367933 (-) | 1398 | WP_237043881.1 | O-antigen ligase family protein | - |
| AM489_RS25610 (AM489_25610) | pilA/pilAI | 5368007..5368474 (-) | 468 | WP_110590994.1 | pilin | Machinery gene |
| AM489_RS25615 (AM489_25615) | pilB | 5368705..5370405 (+) | 1701 | WP_003122078.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| AM489_RS25620 (AM489_25620) | pilC | 5370409..5371626 (+) | 1218 | WP_003161763.1 | type II secretion system F family protein | Machinery gene |
| AM489_RS25625 (AM489_25625) | pilD | 5371627..5372499 (+) | 873 | WP_003161765.1 | type IV prepilin peptidase/methyltransferase PilD | Machinery gene |
| AM489_RS25630 (AM489_25630) | coaE | 5372496..5373107 (+) | 612 | WP_003094654.1 | dephospho-CoA kinase | - |
| AM489_RS25635 (AM489_25635) | yacG | 5373104..5373304 (+) | 201 | WP_003094656.1 | DNA gyrase inhibitor YacG | - |
Sequence
Protein
Download Length: 155 a.a. Molecular weight: 15958.31 Da Isoelectric Point: 9.4382
>NTDB_id=257410 AM489_RS25610 WP_110590994.1 5368007..5368474(-) (pilA/pilAI) [Pseudomonas aeruginosa strain AR_0110]
MKAQKGFTLIELMIVVAIIGILAAIAIPQYQDYTARTQVTRAVSEISALKTAAESAILEGKKLVSKDNPANGEYDLGFTK
STLLAGNDGKAQITITGESSATPTIAGTLGNSAGKAISGAVITIKRSAEGVWTCAISGSPANWKANYAPANCPKS
MKAQKGFTLIELMIVVAIIGILAAIAIPQYQDYTARTQVTRAVSEISALKTAAESAILEGKKLVSKDNPANGEYDLGFTK
STLLAGNDGKAQITITGESSATPTIAGTLGNSAGKAISGAVITIKRSAEGVWTCAISGSPANWKANYAPANCPKS
Nucleotide
Download Length: 468 bp
>NTDB_id=257410 AM489_RS25610 WP_110590994.1 5368007..5368474(-) (pilA/pilAI) [Pseudomonas aeruginosa strain AR_0110]
ATGAAAGCTCAGAAGGGTTTTACTCTGATCGAACTGATGATCGTGGTCGCGATCATCGGCATCCTGGCCGCCATTGCCAT
CCCGCAATACCAGGACTACACCGCCCGTACCCAGGTGACCCGTGCCGTGAGTGAAATCAGCGCGTTGAAGACCGCTGCGG
AGTCGGCGATTCTGGAAGGCAAGAAGCTTGTTTCCAAGGATAATCCCGCGAATGGGGAATATGATCTTGGTTTTACCAAG
TCTACTTTGCTTGCTGGCAACGACGGTAAGGCACAGATCACCATCACTGGCGAAAGCAGTGCAACCCCGACCATTGCGGG
GACTCTGGGTAACTCTGCTGGTAAGGCCATCAGCGGTGCCGTTATCACCATCAAGCGTAGTGCTGAGGGAGTCTGGACCT
GCGCTATCAGTGGGTCTCCGGCCAACTGGAAAGCCAACTACGCTCCGGCCAACTGCCCGAAATCCTAA
ATGAAAGCTCAGAAGGGTTTTACTCTGATCGAACTGATGATCGTGGTCGCGATCATCGGCATCCTGGCCGCCATTGCCAT
CCCGCAATACCAGGACTACACCGCCCGTACCCAGGTGACCCGTGCCGTGAGTGAAATCAGCGCGTTGAAGACCGCTGCGG
AGTCGGCGATTCTGGAAGGCAAGAAGCTTGTTTCCAAGGATAATCCCGCGAATGGGGAATATGATCTTGGTTTTACCAAG
TCTACTTTGCTTGCTGGCAACGACGGTAAGGCACAGATCACCATCACTGGCGAAAGCAGTGCAACCCCGACCATTGCGGG
GACTCTGGGTAACTCTGCTGGTAAGGCCATCAGCGGTGCCGTTATCACCATCAAGCGTAGTGCTGAGGGAGTCTGGACCT
GCGCTATCAGTGGGTCTCCGGCCAACTGGAAAGCCAACTACGCTCCGGCCAACTGCCCGAAATCCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
45.679 |
100 |
0.477 |
| pilA | Acinetobacter baumannii strain A118 |
43.312 |
100 |
0.439 |
| pilA | Pseudomonas aeruginosa PAK |
40.361 |
100 |
0.432 |
| pilA | Ralstonia pseudosolanacearum GMI1000 |
38.012 |
100 |
0.419 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
43.262 |
90.968 |
0.394 |
| pilA | Vibrio cholerae strain A1552 |
43.262 |
90.968 |
0.394 |
| pilA | Vibrio cholerae C6706 |
43.262 |
90.968 |
0.394 |
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
39.333 |
96.774 |
0.381 |