Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   CVO91_RS00475 Genome accession   NZ_CP024974
Coordinates   78319..79500 (+) Length   393 a.a.
NCBI ID   WP_004195472.1    Uniprot ID   -
Organism   Streptococcus suis strain CZ130302     
Function   require for competence (predicted from homology)   
Unclear

Genomic Context

Location: 73319..84500
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CVO91_RS00445 (CVO91_00445) mutL 73336..75273 (+) 1938 WP_004195460.1 DNA mismatch repair endonuclease MutL -
  CVO91_RS00450 (CVO91_00450) - 75347..75712 (+) 366 WP_004195462.1 helix-turn-helix transcriptional regulator -
  CVO91_RS00455 (CVO91_00455) - 75727..76374 (+) 648 WP_004195464.1 type II CAAX endopeptidase family protein -
  CVO91_RS00460 (CVO91_00460) ruvA 76453..77043 (+) 591 WP_004195467.1 Holliday junction branch migration protein RuvA -
  CVO91_RS00470 (CVO91_00470) - 77713..78282 (+) 570 WP_004195470.1 DNA-3-methyladenine glycosylase I -
  CVO91_RS00475 (CVO91_00475) cinA 78319..79500 (+) 1182 WP_004195472.1 competence/damage-inducible protein A Machinery gene
  CVO91_RS00480 (CVO91_00480) recA 79552..80703 (+) 1152 WP_004195473.1 recombinase RecA Machinery gene
  CVO91_RS00485 (CVO91_00485) spx 80863..81261 (+) 399 WP_004195475.1 transcriptional regulator Spx -
  CVO91_RS00490 (CVO91_00490) - 81368..81634 (+) 267 WP_004195477.1 IreB family regulatory phosphoprotein -
  CVO91_RS00495 (CVO91_00495) ruvX 81634..82053 (+) 420 WP_032498174.1 Holliday junction resolvase RuvX -
  CVO91_RS00500 (CVO91_00500) - 82065..82382 (+) 318 WP_004195480.1 DUF1292 domain-containing protein -
  CVO91_RS00505 (CVO91_00505) - 82692..83237 (+) 546 Protein_77 nucleotidyltransferase family protein -
  CVO91_RS00510 (CVO91_00510) comX/sigX 83339..83809 (+) 471 WP_004195486.1 sigma-70 family RNA polymerase sigma factor Regulator
  CVO91_RS00515 (CVO91_00515) rpsJ 84064..84372 (+) 309 WP_014735259.1 30S ribosomal protein S10 -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 42972.92 Da        Isoelectric Point: 4.4091

>NTDB_id=256902 CVO91_RS00475 WP_004195472.1 78319..79500(+) (cinA) [Streptococcus suis strain CZ130302]
MKAELIAVGTEILTGQIINTNAQFLSEKCAELGIDVYFHTAVGDNEQRLLSVLEIASKRSELVILCGGLGPTEDDLTKQT
LATFLGRNLVFDELAMAKLDRFFASRPGRVRTPNNERQAQIVEGSQALQNPAGLAVGGMIEQDGVTYIVLPGPPSELKAM
FSESLLPLLSQSQQQLYSRVLRFFGIGESQLVTVLADLIDKQTDPTLAPYAKVGEVTLRLSTKATSQEEANLRLNQLEEE
ILQHDKLADYLYAYGEENSLVKTVATRLAEKRQTIAIVEQGTGGLLQAELSLALAGQPYFSGGKVIGQLGTESGWLSEEA
DYIRQELQADLGLAVSVLIKPESTEDNVLAKVYLTLATTSGISQKEIDLGGYSWQYLRQLACLQAWDFVRNTL

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=256902 CVO91_RS00475 WP_004195472.1 78319..79500(+) (cinA) [Streptococcus suis strain CZ130302]
ATGAAAGCAGAACTAATCGCCGTTGGGACGGAGATTTTGACAGGTCAAATCATTAATACCAATGCTCAGTTCCTTTCGGA
GAAATGTGCAGAGCTGGGAATTGATGTTTATTTCCACACAGCTGTTGGAGATAATGAACAGAGGCTTTTGTCTGTACTGG
AGATAGCCAGCAAGCGTAGTGAGCTAGTCATTCTCTGTGGAGGACTTGGTCCAACAGAAGATGACTTGACCAAGCAGACC
CTGGCGACCTTCTTAGGTAGAAATCTTGTGTTTGATGAGTTGGCTATGGCAAAATTAGACCGTTTCTTTGCCAGTCGCCC
AGGTCGTGTCCGTACACCAAATAATGAACGTCAGGCACAGATTGTGGAGGGAAGTCAGGCGCTTCAGAATCCAGCTGGTT
TAGCTGTTGGTGGTATGATTGAGCAAGATGGTGTAACCTATATTGTTTTGCCTGGCCCACCAAGTGAGCTCAAGGCCATG
TTTTCTGAGAGTCTCTTACCTTTACTGTCCCAATCTCAGCAGCAACTTTATTCGCGTGTCCTACGCTTTTTTGGCATTGG
TGAAAGCCAGTTAGTGACTGTTTTGGCGGACTTGATTGACAAGCAGACAGACCCAACTCTTGCTCCTTATGCAAAAGTTG
GAGAGGTGACTTTACGCTTGTCCACCAAAGCGACCAGCCAAGAAGAAGCAAATCTACGTTTAAATCAGTTGGAAGAAGAA
ATCTTACAACATGACAAACTGGCAGACTATCTCTATGCCTACGGAGAGGAAAATAGTTTGGTCAAAACGGTAGCGACTCG
TTTGGCGGAGAAAAGACAAACCATCGCTATCGTCGAACAGGGGACAGGTGGTCTCTTGCAAGCTGAATTGAGTTTGGCTT
TGGCAGGCCAGCCTTATTTTAGCGGAGGAAAAGTCATCGGTCAGCTAGGGACAGAATCGGGCTGGCTATCAGAGGAAGCT
GACTACATTCGGCAGGAGCTGCAAGCTGATTTGGGTTTGGCTGTGTCTGTGCTTATCAAACCGGAATCAACAGAGGACAA
CGTACTTGCAAAAGTATATCTCACTTTGGCTACGACCTCGGGTATTTCCCAAAAAGAGATAGATTTAGGTGGTTATTCGT
GGCAATACCTTCGCCAGCTTGCTTGTCTGCAGGCCTGGGATTTTGTACGAAACACTTTGTGA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(178-253)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus suis isolate S10

96.183

100

0.962
  cinA Streptococcus pneumoniae Rx1

56.49

100

0.598
  cinA Streptococcus pneumoniae R6

56.49

100

0.598
  cinA Streptococcus mitis SK321

56.49

100

0.598
  cinA Streptococcus pneumoniae TIGR4

56.49

100

0.598
  cinA Streptococcus mitis NCTC 12261

56.25

100

0.595
  cinA Streptococcus pneumoniae D39

56.25

100

0.595
  cinA Streptococcus mutans UA159

56.934

100

0.595
  cinA Bacillus subtilis subsp. subtilis str. 168

40.665

99.491

0.405

Multiple sequence alignment