Detailed information
Bioinformatically predicted
Overview
| Name | ssbB | Type | Machinery gene |
| Locus tag | CV702_RS01870 | Genome accession | NZ_CP024954 |
| Coordinates | 373772..374161 (+) | Length | 129 a.a. |
| NCBI ID | WP_017864128.1 | Uniprot ID | A0AAE4NTC1 |
| Organism | Lactococcus lactis subsp. lactis strain F44 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 373772..380257 | 373772..374161 | within | 0 |
Gene organization within MGE regions
Location: 373772..380257
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CV702_RS01870 (CV702_01870) | ssbB | 373772..374161 (+) | 390 | WP_017864128.1 | single-stranded DNA-binding protein | Machinery gene |
| CV702_RS01875 (CV702_01875) | groES | 374281..374565 (+) | 285 | WP_017864129.1 | co-chaperone GroES | - |
| CV702_RS01880 (CV702_01880) | groL | 374653..376281 (+) | 1629 | WP_003131585.1 | chaperonin GroEL | - |
| CV702_RS01885 (CV702_01885) | - | 376327..377139 (-) | 813 | WP_003131583.1 | MBL fold metallo-hydrolase | - |
| CV702_RS01890 (CV702_01890) | - | 377308..378750 (-) | 1443 | WP_012897229.1 | sensor histidine kinase | - |
| CV702_RS01895 (CV702_01895) | yycF | 378743..379444 (-) | 702 | WP_003131580.1 | response regulator YycF | - |
| CV702_RS01900 (CV702_01900) | tmk | 379622..380257 (+) | 636 | WP_012897230.1 | dTMP kinase | - |
Sequence
Protein
Download Length: 129 a.a. Molecular weight: 14702.76 Da Isoelectric Point: 8.3705
>NTDB_id=256702 CV702_RS01870 WP_017864128.1 373772..374161(+) (ssbB) [Lactococcus lactis subsp. lactis strain F44]
MNKTMLIGRLTSAPEISKTTNDKSYVRVTLAVNRRFKNEKGERETDFISIIIWGKSAETLVSYAKKGSLISIEGEIRTRN
YTDKQNQKHYVTEILGLSYDLLESRATIALRESAIKTEETLLDAEELPF
MNKTMLIGRLTSAPEISKTTNDKSYVRVTLAVNRRFKNEKGERETDFISIIIWGKSAETLVSYAKKGSLISIEGEIRTRN
YTDKQNQKHYVTEILGLSYDLLESRATIALRESAIKTEETLLDAEELPF
Nucleotide
Download Length: 390 bp
>NTDB_id=256702 CV702_RS01870 WP_017864128.1 373772..374161(+) (ssbB) [Lactococcus lactis subsp. lactis strain F44]
ATGAATAAAACCATGTTAATTGGACGCTTAACCAGTGCGCCAGAAATTTCAAAAACAACAAATGATAAATCATATGTCCG
TGTGACCTTGGCAGTCAATCGCCGTTTCAAAAATGAAAAAGGAGAACGAGAGACAGATTTTATTTCAATTATTATTTGGG
GAAAATCTGCAGAAACTTTAGTTTCTTACGCAAAAAAAGGAAGTCTTATTTCAATTGAAGGAGAAATTAGAACTAGAAAT
TATACGGATAAGCAAAATCAAAAACATTATGTCACAGAAATCTTAGGACTGAGTTATGATTTACTTGAAAGTAGGGCAAC
AATCGCTTTACGAGAAAGCGCTATAAAGACTGAAGAAACCTTACTTGATGCGGAAGAACTCCCTTTCTAA
ATGAATAAAACCATGTTAATTGGACGCTTAACCAGTGCGCCAGAAATTTCAAAAACAACAAATGATAAATCATATGTCCG
TGTGACCTTGGCAGTCAATCGCCGTTTCAAAAATGAAAAAGGAGAACGAGAGACAGATTTTATTTCAATTATTATTTGGG
GAAAATCTGCAGAAACTTTAGTTTCTTACGCAAAAAAAGGAAGTCTTATTTCAATTGAAGGAGAAATTAGAACTAGAAAT
TATACGGATAAGCAAAATCAAAAACATTATGTCACAGAAATCTTAGGACTGAGTTATGATTTACTTGAAAGTAGGGCAAC
AATCGCTTTACGAGAAAGCGCTATAAAGACTGAAGAAACCTTACTTGATGCGGAAGAACTCCCTTTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbB | Lactococcus lactis subsp. cremoris KW2 |
89.922 |
100 |
0.899 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
60 |
100 |
0.605 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
56.154 |
100 |
0.566 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
55.385 |
100 |
0.558 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
55.385 |
100 |
0.558 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
55.385 |
100 |
0.558 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
55.385 |
100 |
0.558 |
| ssbB/cilA | Streptococcus mitis SK321 |
55.385 |
100 |
0.558 |
| ssbA | Streptococcus mutans UA159 |
54.615 |
100 |
0.55 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
42.857 |
86.822 |
0.372 |