Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | CPZ87_RS24680 | Genome accession | NZ_CP024645 |
| Coordinates | 5392425..5393642 (+) | Length | 405 a.a. |
| NCBI ID | WP_085753131.1 | Uniprot ID | A0A1W6LEX1 |
| Organism | Piscinibacter gummiphilus strain NBRC 109400 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 5387425..5398642
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CPZ87_RS24670 (CPZ87_24665) | - | 5388998..5390227 (-) | 1230 | WP_085753129.1 | acyl-CoA dehydrogenase family protein | - |
| CPZ87_RS24675 (CPZ87_24670) | pilF | 5390599..5392323 (+) | 1725 | WP_085753130.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| CPZ87_RS24680 (CPZ87_24675) | pilC | 5392425..5393642 (+) | 1218 | WP_085753131.1 | type II secretion system F family protein | Machinery gene |
| CPZ87_RS24685 (CPZ87_24680) | pilD | 5393703..5394512 (+) | 810 | WP_269466971.1 | A24 family peptidase | Machinery gene |
| CPZ87_RS24690 (CPZ87_24685) | coaE | 5394517..5395176 (+) | 660 | WP_085753133.1 | dephospho-CoA kinase | - |
| CPZ87_RS24695 (CPZ87_24690) | zapD | 5395196..5395951 (+) | 756 | WP_085753134.1 | cell division protein ZapD | - |
| CPZ87_RS24700 (CPZ87_24695) | - | 5395948..5396157 (+) | 210 | WP_085753135.1 | DNA gyrase inhibitor YacG | - |
| CPZ87_RS24705 (CPZ87_24700) | - | 5396197..5397963 (+) | 1767 | WP_085753136.1 | zinc ribbon domain-containing protein | - |
Sequence
Protein
Download Length: 405 a.a. Molecular weight: 44182.99 Da Isoelectric Point: 9.7176
>NTDB_id=254691 CPZ87_RS24680 WP_085753131.1 5392425..5393642(+) (pilC) [Piscinibacter gummiphilus strain NBRC 109400]
MATAAAVREKEFVFEWEGKDKNGKIVRGEIRAGGEAMVSATLRRQGILIRKVKKRRTSGGRAIQPKDVAVFTRQLATMMR
AGVPLLQSFDIVARGSSNPRLTKLLTDIRTDVETGTSLSSAFRKHPLYFDSLYCNLVEAGEAAGILDTLLDRLAVYQEKT
LAIKAKIKSALIYPVAVLVVAFIVVVIIMMFVIPVFKEVFTSFGADLPAPTLLVMAMSDFFLKWWWAIFGFLGGGIYFFF
ESWRRSEKMQRTMDRLLLKVPIFGELINKASVARWTRTLSTMFAAGVPLVEALDSVGGAAGNAVFRDATYQIQKDVSTGA
SLTSSMETTGVFPNMVLQMSAIGEESGALDGMLGKAAEFYEAEVDEAVAGLSSLMEPIIIVILGTIIGGIVVAMYLPIFK
LGAVV
MATAAAVREKEFVFEWEGKDKNGKIVRGEIRAGGEAMVSATLRRQGILIRKVKKRRTSGGRAIQPKDVAVFTRQLATMMR
AGVPLLQSFDIVARGSSNPRLTKLLTDIRTDVETGTSLSSAFRKHPLYFDSLYCNLVEAGEAAGILDTLLDRLAVYQEKT
LAIKAKIKSALIYPVAVLVVAFIVVVIIMMFVIPVFKEVFTSFGADLPAPTLLVMAMSDFFLKWWWAIFGFLGGGIYFFF
ESWRRSEKMQRTMDRLLLKVPIFGELINKASVARWTRTLSTMFAAGVPLVEALDSVGGAAGNAVFRDATYQIQKDVSTGA
SLTSSMETTGVFPNMVLQMSAIGEESGALDGMLGKAAEFYEAEVDEAVAGLSSLMEPIIIVILGTIIGGIVVAMYLPIFK
LGAVV
Nucleotide
Download Length: 1218 bp
>NTDB_id=254691 CPZ87_RS24680 WP_085753131.1 5392425..5393642(+) (pilC) [Piscinibacter gummiphilus strain NBRC 109400]
ATGGCAACAGCAGCAGCCGTCAGAGAAAAAGAGTTCGTATTCGAGTGGGAAGGCAAGGACAAGAACGGCAAGATCGTCCG
TGGGGAAATCCGCGCCGGCGGCGAAGCCATGGTCAGTGCCACGCTGCGCCGCCAGGGCATCCTGATCCGCAAGGTGAAGA
AGCGCCGCACGAGCGGCGGCCGTGCCATCCAGCCGAAGGACGTGGCGGTGTTCACCCGCCAGCTGGCCACCATGATGCGC
GCCGGCGTGCCGCTGCTGCAGTCGTTCGACATCGTGGCCCGCGGCAGTTCGAACCCGCGCCTGACCAAGCTGCTGACCGA
CATCCGCACCGACGTCGAGACCGGTACCAGCCTGTCCTCCGCGTTCCGCAAGCACCCGCTGTACTTCGATTCGCTGTACT
GCAACCTGGTCGAGGCCGGTGAAGCCGCCGGTATTCTCGACACCCTGCTCGACCGCCTGGCCGTGTACCAGGAAAAGACG
CTGGCCATCAAGGCCAAGATCAAGTCGGCCCTGATCTACCCGGTGGCCGTGCTCGTCGTCGCCTTCATCGTGGTCGTCAT
CATCATGATGTTCGTGATCCCGGTGTTCAAGGAGGTGTTCACCTCCTTCGGCGCCGACCTCCCGGCGCCCACGCTGCTCG
TGATGGCCATGTCCGACTTCTTCCTGAAGTGGTGGTGGGCCATCTTCGGCTTCCTGGGAGGCGGCATCTACTTCTTCTTC
GAATCGTGGCGGCGCTCCGAGAAGATGCAGCGCACCATGGACCGCCTGCTGCTGAAGGTGCCCATCTTCGGCGAGCTGAT
CAACAAGGCGTCGGTGGCCCGCTGGACCCGCACCCTCTCCACGATGTTCGCCGCCGGCGTGCCGCTGGTCGAGGCGCTCG
ACTCCGTGGGTGGCGCTGCCGGCAATGCGGTGTTCCGCGACGCCACGTACCAGATCCAGAAGGACGTCTCCACCGGCGCC
AGCCTCACCTCGTCGATGGAAACCACCGGCGTGTTCCCGAACATGGTGCTGCAGATGTCCGCCATCGGCGAGGAGTCCGG
TGCACTCGACGGCATGCTCGGCAAGGCTGCCGAGTTCTACGAGGCCGAGGTGGACGAGGCCGTGGCCGGCCTGTCCAGCC
TGATGGAACCGATCATCATCGTGATCCTCGGTACCATCATCGGTGGCATCGTGGTCGCGATGTACCTGCCGATCTTCAAG
CTCGGGGCGGTGGTCTGA
ATGGCAACAGCAGCAGCCGTCAGAGAAAAAGAGTTCGTATTCGAGTGGGAAGGCAAGGACAAGAACGGCAAGATCGTCCG
TGGGGAAATCCGCGCCGGCGGCGAAGCCATGGTCAGTGCCACGCTGCGCCGCCAGGGCATCCTGATCCGCAAGGTGAAGA
AGCGCCGCACGAGCGGCGGCCGTGCCATCCAGCCGAAGGACGTGGCGGTGTTCACCCGCCAGCTGGCCACCATGATGCGC
GCCGGCGTGCCGCTGCTGCAGTCGTTCGACATCGTGGCCCGCGGCAGTTCGAACCCGCGCCTGACCAAGCTGCTGACCGA
CATCCGCACCGACGTCGAGACCGGTACCAGCCTGTCCTCCGCGTTCCGCAAGCACCCGCTGTACTTCGATTCGCTGTACT
GCAACCTGGTCGAGGCCGGTGAAGCCGCCGGTATTCTCGACACCCTGCTCGACCGCCTGGCCGTGTACCAGGAAAAGACG
CTGGCCATCAAGGCCAAGATCAAGTCGGCCCTGATCTACCCGGTGGCCGTGCTCGTCGTCGCCTTCATCGTGGTCGTCAT
CATCATGATGTTCGTGATCCCGGTGTTCAAGGAGGTGTTCACCTCCTTCGGCGCCGACCTCCCGGCGCCCACGCTGCTCG
TGATGGCCATGTCCGACTTCTTCCTGAAGTGGTGGTGGGCCATCTTCGGCTTCCTGGGAGGCGGCATCTACTTCTTCTTC
GAATCGTGGCGGCGCTCCGAGAAGATGCAGCGCACCATGGACCGCCTGCTGCTGAAGGTGCCCATCTTCGGCGAGCTGAT
CAACAAGGCGTCGGTGGCCCGCTGGACCCGCACCCTCTCCACGATGTTCGCCGCCGGCGTGCCGCTGGTCGAGGCGCTCG
ACTCCGTGGGTGGCGCTGCCGGCAATGCGGTGTTCCGCGACGCCACGTACCAGATCCAGAAGGACGTCTCCACCGGCGCC
AGCCTCACCTCGTCGATGGAAACCACCGGCGTGTTCCCGAACATGGTGCTGCAGATGTCCGCCATCGGCGAGGAGTCCGG
TGCACTCGACGGCATGCTCGGCAAGGCTGCCGAGTTCTACGAGGCCGAGGTGGACGAGGCCGTGGCCGGCCTGTCCAGCC
TGATGGAACCGATCATCATCGTGATCCTCGGTACCATCATCGGTGGCATCGTGGTCGCGATGTACCTGCCGATCTTCAAG
CTCGGGGCGGTGGTCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Pseudomonas stutzeri DSM 10701 |
55.138 |
98.519 |
0.543 |
| pilG | Neisseria meningitidis 44/76-A |
54.25 |
98.765 |
0.536 |
| pilG | Neisseria gonorrhoeae MS11 |
54.25 |
98.765 |
0.536 |
| pilC | Legionella pneumophila strain ERS1305867 |
52.273 |
97.778 |
0.511 |
| pilC | Acinetobacter baylyi ADP1 |
50 |
98.272 |
0.491 |
| pilC | Acinetobacter baumannii D1279779 |
48.615 |
98.025 |
0.477 |
| pilC | Vibrio cholerae strain A1552 |
40.5 |
98.765 |
0.4 |
| pilC | Thermus thermophilus HB27 |
38.958 |
99.506 |
0.388 |
| pilC | Vibrio campbellii strain DS40M4 |
39.25 |
98.765 |
0.388 |