Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   DLM49_RS08890 Genome accession   NZ_CP029601
Coordinates   2075495..2076274 (+) Length   259 a.a.
NCBI ID   WP_125503863.1    Uniprot ID   -
Organism   Streptomyces sp. WAC 01438     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2070495..2081274
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DLM49_RS08875 (DLM49_08900) - 2070692..2071225 (+) 534 WP_125503860.1 TerD family protein -
  DLM49_RS08880 (DLM49_08905) - 2071327..2074221 (-) 2895 WP_125503861.1 vitamin B12-dependent ribonucleotide reductase -
  DLM49_RS08885 (DLM49_08910) nrdR 2074386..2074943 (-) 558 WP_125503862.1 transcriptional regulator NrdR -
  DLM49_RS08890 (DLM49_08915) dinR/lexA 2075495..2076274 (+) 780 WP_125503863.1 transcriptional repressor LexA Regulator
  DLM49_RS08895 (DLM49_08920) - 2076375..2078363 (-) 1989 WP_125503864.1 ATP-dependent DNA helicase -
  DLM49_RS08900 (DLM49_08925) - 2078500..2079171 (-) 672 WP_125503865.1 GNAT family N-acetyltransferase -
  DLM49_RS08905 (DLM49_08930) - 2079066..2081216 (-) 2151 WP_125503866.1 IucA/IucC family protein -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 27942.70 Da        Isoelectric Point: 7.0666

>NTDB_id=254690 DLM49_RS08890 WP_125503863.1 2075495..2076274(+) (dinR/lexA) [Streptomyces sp. WAC 01438]
MTTTADSAAITAQDRSQGRLEPVHAMNEATHPEGPKRSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYPPSMREI
GQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQAAAVQPTDTAGKPAASYVPLVGRIAAGGPILAEESVED
VFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDGHVWLLPHNAAYEP
IPGDDATILGKVVAVLRRV

Nucleotide


Download         Length: 780 bp        

>NTDB_id=254690 DLM49_RS08890 WP_125503863.1 2075495..2076274(+) (dinR/lexA) [Streptomyces sp. WAC 01438]
GTGACCACCACCGCTGACAGTGCCGCCATCACTGCCCAGGACCGCTCCCAGGGCCGGCTCGAGCCGGTGCATGCGATGAA
CGAAGCCACGCATCCCGAGGGGCCCAAGCGCTCCCTGCCGGGACGGCCTCCCGGCATCCGGGCGGACAGCTCCGGACTCA
CCGACCGCCAGCGCCGGGTGATCGAGGTCATCAGGGACTCGGTGCAGCGACGGGGTTACCCGCCGTCGATGCGCGAGATC
GGCCAGGCGGTCGGTCTCTCCAGCACCTCCTCGGTGGCCCACCAGCTCATGGCCCTCGAGCGCAAGGGCTTCCTGCGCCG
CGACCCGCACCGTCCGCGCGCGTACGAGGTACGCGGCTCCGACCAGGCCGCGGCCGTCCAGCCCACCGACACCGCGGGGA
AGCCCGCCGCGTCCTATGTGCCGCTGGTCGGCCGTATCGCCGCCGGTGGTCCGATCCTGGCCGAGGAGTCCGTCGAGGAC
GTCTTCCCCCTGCCCCGGCAACTCGTCGGCGACGGCGAACTGTTCGTACTGAAGGTCGTGGGTGACTCCATGATCGAGGC
CGCGATCTGTGACGGCGACTGGGTCACGGTCCGCCGCCAGCCGGTCGCCGAGAACGGCGACATCGTGGCGGCGATGCTCG
ACGGCGAGGCGACCGTCAAGCGCTTCAAGCGCGAGGACGGCCATGTCTGGCTGCTCCCGCACAACGCGGCCTACGAGCCG
ATCCCCGGCGACGACGCGACCATTCTGGGCAAGGTGGTGGCCGTACTGCGCCGCGTCTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(141-253)

LexA DNA binding domain (LexA_DNA_bind)

(51-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

45.972

81.467

0.375

Multiple sequence alignment