Detailed information NTG0254655

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: DLJ64_RS19755
• Genome accession: NZ_CP029579
• Coordinates: 3812618..3813610 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain DA33137
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3807618..3818610

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DLJ64_RS19725 (DLJ64_19725)	ispD	3807679..3808389 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
DLJ64_RS19730 (DLJ64_19730)	ispF	3808389..3808868 (+)	480	WP_001521152.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
DLJ64_RS19735 (DLJ64_19735)	truD	3808865..3809914 (+)	1050	WP_000568924.1	tRNA pseudouridine(13) synthase TruD	-
DLJ64_RS19740 (DLJ64_19740)	surE	3809895..3810656 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
DLJ64_RS19745 (DLJ64_19745)	pcm	3810650..3811276 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
DLJ64_RS19750 (DLJ64_19750)	nlpD	3811461..3812555 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
DLJ64_RS19755 (DLJ64_19755)	rpoS	3812618..3813610 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
DLJ64_RS19760 (DLJ64_19760)	-	3813731..3814138 (-)	408	WP_001521151.1	MarR family transcriptional regulator	-
DLJ64_RS19765 (DLJ64_19765)	-	3814285..3814878 (+)	594	WP_001521150.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
DLJ64_RS19770 (DLJ64_19770)	-	3814878..3816305 (+)	1428	WP_000863205.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
DLJ64_RS19775 (DLJ64_19775)	-	3816316..3816552 (+)	237	WP_000562982.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
DLJ64_RS19780 (DLJ64_19780)	ygbN	3816591..3817955 (-)	1365	WP_000104455.1	GntP family transporter	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=254655 DLJ64_RS19755 WP_000081550.1 3812618..3813610(+) (rpoS) [Escherichia coli strain DA33137]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=254655 DLJ64_RS19755 WP_000081550.1 3812618..3813610(+) (rpoS) [Escherichia coli strain DA33137]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTTGCCTCCCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGCGAGTTGTCCCA
TAAACTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715