Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   NP7_RS09495 Genome accession   NZ_CP024443
Coordinates   2131100..2132323 (-) Length   407 a.a.
NCBI ID   WP_100270609.1    Uniprot ID   A0A2I5HRX5
Organism   Moraxella osloensis strain NP7     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2126100..2137323
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NP7_RS09475 (NP7_12805) - 2126928..2128031 (+) 1104 WP_100270606.1 bifunctional nicotinamide-nucleotide adenylyltransferase/Nudix hydroxylase -
  NP7_RS09480 (NP7_12810) - 2128102..2129508 (+) 1407 WP_100270607.1 nicotinate phosphoribosyltransferase -
  NP7_RS09485 (NP7_12815) coaE 2129566..2130222 (-) 657 WP_227523072.1 dephospho-CoA kinase -
  NP7_RS09490 (NP7_12820) pilD 2130219..2131094 (-) 876 WP_100270608.1 prepilin peptidase Machinery gene
  NP7_RS09495 (NP7_12825) pilC 2131100..2132323 (-) 1224 WP_100270609.1 type II secretion system F family protein Machinery gene
  NP7_RS09500 (NP7_12830) pilB 2132380..2134086 (-) 1707 WP_100270610.1 type IV-A pilus assembly ATPase PilB Machinery gene
  NP7_RS09505 (NP7_12835) tpiA 2134521..2135375 (+) 855 WP_100270611.1 triose-phosphate isomerase -
  NP7_RS09510 (NP7_12840) secG 2135465..2135785 (+) 321 WP_062332397.1 preprotein translocase subunit SecG -
  NP7_RS09525 (NP7_12855) rimP 2136363..2136872 (+) 510 WP_100270612.1 ribosome maturation factor RimP -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 44868.90 Da        Isoelectric Point: 9.7937

>NTDB_id=253564 NP7_RS09495 WP_100270609.1 2131100..2132323(-) (pilC) [Moraxella osloensis strain NP7]
MAKVQTEMLLDFVYDGVNRRGEKVKGETTSRNIELAKAQLRKQGIKVKTIKKKPKPIFQMKKSIKPIDIAIFVRQLATMM
KAGVPLTQSFEIVADALDNPSMKELVLSVKSEVESGSTFAAALRKHPRYFDDLFCSLVEAGEQSGALETMLERVATYKEK
SELLKAKIKKALKYPIAVIVVAIIVTIILLVKVVPVFADLFNSFGAELPAFTRMVVSMSEWMQKWWWLLLFSIAGAVVGF
SEAKKRSKPFNDFLDRLTLKLPIFGNIAYQAVVARFSRTLSTTFAAGVPLIDALDSTAGATNNVVFYNATQKIKGDVATG
QQLQFSMRSTNLFPSMAIQMVGIGEESGSLEEMLDKVATYYENEVDNAVDGLTSLMEPMIMAILGVLVGGLVIAMYLPIF
QMGSVVG

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=253564 NP7_RS09495 WP_100270609.1 2131100..2132323(-) (pilC) [Moraxella osloensis strain NP7]
ATGGCAAAAGTCCAAACAGAAATGTTATTAGACTTTGTCTATGATGGGGTCAATCGCCGTGGTGAAAAAGTCAAAGGTGA
AACCACCAGCCGCAATATTGAGCTGGCAAAGGCGCAACTACGCAAGCAAGGCATCAAAGTCAAGACGATCAAGAAAAAAC
CTAAGCCTATTTTTCAAATGAAAAAAAGCATCAAGCCAATTGATATTGCTATCTTTGTGCGGCAGTTGGCTACGATGATG
AAAGCGGGCGTCCCCCTTACTCAGTCGTTTGAAATTGTTGCAGATGCGCTCGATAACCCCTCAATGAAAGAGTTGGTGCT
TAGTGTCAAATCAGAAGTGGAATCAGGTAGCACCTTTGCTGCAGCGCTGCGCAAACATCCCAGATATTTTGATGACCTGT
TTTGTTCATTAGTAGAGGCAGGTGAGCAATCAGGTGCCCTTGAAACCATGCTTGAGCGTGTCGCGACGTACAAAGAAAAA
AGCGAGCTACTAAAAGCAAAAATCAAAAAAGCTTTGAAATACCCGATTGCGGTTATCGTGGTGGCGATTATCGTTACCAT
TATTTTGCTGGTCAAAGTGGTACCGGTGTTTGCTGATTTATTCAATTCATTTGGTGCAGAGTTACCCGCGTTTACCCGAA
TGGTAGTCAGTATGTCGGAGTGGATGCAAAAATGGTGGTGGTTATTGCTATTTAGCATTGCAGGCGCTGTGGTTGGCTTT
TCTGAAGCTAAAAAACGTAGCAAGCCCTTTAATGATTTTTTAGACCGATTAACCTTAAAATTACCAATCTTTGGCAATAT
TGCTTATCAAGCGGTGGTTGCCCGTTTTTCCCGCACTTTATCTACCACTTTTGCCGCAGGTGTGCCGCTGATTGATGCGT
TAGATTCAACCGCTGGGGCAACCAACAATGTGGTATTTTATAATGCGACGCAAAAAATTAAAGGCGATGTTGCGACGGGT
CAACAGCTGCAGTTTTCGATGCGTTCTACCAATCTTTTCCCCAGTATGGCTATCCAAATGGTTGGTATTGGTGAGGAGTC
AGGTAGTCTAGAGGAGATGCTTGATAAAGTGGCGACTTATTATGAAAACGAAGTGGATAACGCTGTAGACGGGTTAACAA
GTCTGATGGAACCAATGATTATGGCTATTTTGGGGGTGCTGGTAGGGGGTCTGGTGATTGCCATGTATCTACCAATTTTC
CAAATGGGCTCGGTGGTGGGCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2I5HRX5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

70.343

100

0.705
  pilC Acinetobacter baylyi ADP1

69.118

100

0.693
  pilC Pseudomonas stutzeri DSM 10701

64.557

97.052

0.627
  pilC Legionella pneumophila strain ERS1305867

56.14

98.034

0.55
  pilC Vibrio cholerae strain A1552

43.137

100

0.432
  pilG Neisseria gonorrhoeae MS11

44.444

97.297

0.432
  pilG Neisseria meningitidis 44/76-A

44.192

97.297

0.43
  pilC Vibrio campbellii strain DS40M4

41.25

98.28

0.405

Multiple sequence alignment