Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   NP7_RS09490 Genome accession   NZ_CP024443
Coordinates   2130219..2131094 (-) Length   291 a.a.
NCBI ID   WP_100270608.1    Uniprot ID   A0A2I5HRT1
Organism   Moraxella osloensis strain NP7     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2125219..2136094
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NP7_RS09470 (NP7_12800) nfuA 2126013..2126630 (-) 618 WP_062332384.1 Fe-S biogenesis protein NfuA -
  NP7_RS09475 (NP7_12805) - 2126928..2128031 (+) 1104 WP_100270606.1 bifunctional nicotinamide-nucleotide adenylyltransferase/Nudix hydroxylase -
  NP7_RS09480 (NP7_12810) - 2128102..2129508 (+) 1407 WP_100270607.1 nicotinate phosphoribosyltransferase -
  NP7_RS09485 (NP7_12815) coaE 2129566..2130222 (-) 657 WP_227523072.1 dephospho-CoA kinase -
  NP7_RS09490 (NP7_12820) pilD 2130219..2131094 (-) 876 WP_100270608.1 prepilin peptidase Machinery gene
  NP7_RS09495 (NP7_12825) pilC 2131100..2132323 (-) 1224 WP_100270609.1 type II secretion system F family protein Machinery gene
  NP7_RS09500 (NP7_12830) pilB 2132380..2134086 (-) 1707 WP_100270610.1 type IV-A pilus assembly ATPase PilB Machinery gene
  NP7_RS09505 (NP7_12835) tpiA 2134521..2135375 (+) 855 WP_100270611.1 triose-phosphate isomerase -
  NP7_RS09510 (NP7_12840) secG 2135465..2135785 (+) 321 WP_062332397.1 preprotein translocase subunit SecG -

Sequence

Protein


Download         Length: 291 a.a.        Molecular weight: 32237.74 Da        Isoelectric Point: 8.1744

>NTDB_id=253563 NP7_RS09490 WP_100270608.1 2130219..2131094(-) (pilD) [Moraxella osloensis strain NP7]
MGIFSDFILLLQQSQWLTLIIVALLGLCVGSFLNVVIYRTPLMMEQQWKNECQLLLHPETIVDHHESITLSRPASRCPHC
GHSIRWFENMPVISWLLLKGKCSQCHHAISYRYPLVEIITAILSVLVVMKFGVTWQALAGLVLTWTLVALTGIDFDTQLL
PDRLTLPLAGLGLFVNAFGLFVSPTAAIFGYVFGFLCLWIVYQLFLLITGKHGMGHGDFKLLAALGAWLGPLMLPLIVLL
SAFVGSVVGVILMKRSGESKPFAFGPYIAIAGMIALLYGQPIMSWYLGKMS

Nucleotide


Download         Length: 876 bp        

>NTDB_id=253563 NP7_RS09490 WP_100270608.1 2130219..2131094(-) (pilD) [Moraxella osloensis strain NP7]
ATGGGGATTTTTTCAGATTTTATTTTGTTGTTACAACAGTCACAATGGCTGACGTTGATTATCGTAGCTTTATTGGGATT
ATGCGTGGGCAGTTTTCTCAATGTGGTGATTTATCGCACGCCTTTGATGATGGAGCAGCAGTGGAAGAACGAATGCCAGC
TATTGCTCCATCCAGAAACCATTGTTGACCATCATGAATCCATTACCTTAAGCCGTCCTGCTTCTCGTTGCCCGCATTGT
GGGCATTCAATACGTTGGTTTGAAAATATGCCTGTTATTAGCTGGCTACTGCTAAAAGGAAAATGTAGTCAGTGTCATCA
CGCCATTAGTTATCGTTATCCGCTTGTAGAAATCATCACCGCTATTTTGTCTGTACTGGTGGTGATGAAATTTGGTGTTA
CTTGGCAAGCGCTGGCAGGATTGGTACTCACATGGACATTAGTGGCTTTGACAGGCATTGATTTTGATACCCAATTGTTG
CCTGACCGATTGACATTGCCGTTAGCGGGATTAGGCTTATTTGTCAATGCCTTTGGCTTGTTTGTCAGTCCCACAGCGGC
TATTTTTGGCTATGTGTTTGGGTTTTTATGCTTGTGGATTGTCTATCAACTGTTTTTGCTGATTACGGGCAAGCACGGGA
TGGGGCATGGCGATTTTAAATTATTAGCGGCTTTGGGGGCTTGGCTAGGGCCTTTGATGCTACCGTTAATTGTGCTTTTA
TCTGCCTTTGTCGGCTCGGTTGTGGGTGTAATATTGATGAAGCGCTCAGGTGAAAGCAAACCTTTTGCATTTGGACCTTA
TATCGCCATTGCCGGCATGATCGCACTGTTGTATGGGCAACCAATAATGTCGTGGTATCTAGGAAAAATGTCATGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(24-131)

Type IV leader peptidase family (Peptidase_A24)

(141-250)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2I5HRT1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter baumannii D1279779

63.028

97.595

0.615
  pilD Acinetobacter nosocomialis M2

63.028

97.595

0.615
  pilD Vibrio campbellii strain DS40M4

49.11

96.564

0.474
  pilD Vibrio cholerae strain A1552

49.635

94.158

0.467
  pilD Neisseria gonorrhoeae MS11

44.815

92.784

0.416

Multiple sequence alignment