Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | KSH_RS09790 | Genome accession | NZ_CP024180 |
| Coordinates | 2203441..2204664 (-) | Length | 407 a.a. |
| NCBI ID | WP_100285197.1 | Uniprot ID | - |
| Organism | Moraxella osloensis strain KSH | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2198441..2209664
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KSH_RS09770 (KSH_11035) | - | 2199270..2200373 (+) | 1104 | WP_173846733.1 | bifunctional nicotinamide-nucleotide adenylyltransferase/Nudix hydroxylase | - |
| KSH_RS09775 (KSH_11040) | - | 2200443..2201849 (+) | 1407 | WP_100285195.1 | nicotinate phosphoribosyltransferase | - |
| KSH_RS09780 (KSH_11045) | coaE | 2201907..2202563 (-) | 657 | WP_227522751.1 | dephospho-CoA kinase | - |
| KSH_RS09785 (KSH_11050) | pilD | 2202560..2203435 (-) | 876 | WP_100285196.1 | A24 family peptidase | Machinery gene |
| KSH_RS09790 (KSH_11055) | pilC | 2203441..2204664 (-) | 1224 | WP_100285197.1 | type II secretion system F family protein | Machinery gene |
| KSH_RS09795 (KSH_11060) | pilB | 2204721..2206427 (-) | 1707 | WP_100285198.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| KSH_RS09800 (KSH_11065) | tpiA | 2206846..2207685 (+) | 840 | WP_100285199.1 | triose-phosphate isomerase | - |
| KSH_RS09805 (KSH_11070) | secG | 2207777..2208097 (+) | 321 | WP_065253803.1 | preprotein translocase subunit SecG | - |
| KSH_RS09820 (KSH_11085) | rimP | 2208661..2209170 (+) | 510 | WP_007115081.1 | ribosome maturation factor RimP | - |
Sequence
Protein
Download Length: 407 a.a. Molecular weight: 44850.85 Da Isoelectric Point: 9.6981
>NTDB_id=252805 KSH_RS09790 WP_100285197.1 2203441..2204664(-) (pilC) [Moraxella osloensis strain KSH]
MAKVQTEMLLDFVYDGVNRRGEKVKGETTSRNIELAKAQLRKQGIKVKTIKKKPKPIFQMKKSIKAIDIAIFVRQLATMM
KAGVPLTQSFEIVADALDNPSMKELVLSVKSEVESGSTFAAALRKHPRYFDDLFCSLVEAGEQSGALETMLERVATYKEK
SELLKAKIKKALKYPIAVIVVAIIVTIILLVKVVPVFADLFHSFGAELPAFTQMVVNMSEWMQKWWWLLLFSIAGAVVGF
SEAKKRSKPFNDFLDRLTLKLPIFGNIAYQAVVARFSRTLSTTFAAGVPLIDALDSTAGATNNVVFYNATQKIKGDVATG
QQLQFSMRSTNLFPSMAIQMVGIGEESGSLEEMLDKVATYYENEVDNAVDGLTSLMEPMIMAVLGVLVGGLVIAMYLPIF
QMGSVVG
MAKVQTEMLLDFVYDGVNRRGEKVKGETTSRNIELAKAQLRKQGIKVKTIKKKPKPIFQMKKSIKAIDIAIFVRQLATMM
KAGVPLTQSFEIVADALDNPSMKELVLSVKSEVESGSTFAAALRKHPRYFDDLFCSLVEAGEQSGALETMLERVATYKEK
SELLKAKIKKALKYPIAVIVVAIIVTIILLVKVVPVFADLFHSFGAELPAFTQMVVNMSEWMQKWWWLLLFSIAGAVVGF
SEAKKRSKPFNDFLDRLTLKLPIFGNIAYQAVVARFSRTLSTTFAAGVPLIDALDSTAGATNNVVFYNATQKIKGDVATG
QQLQFSMRSTNLFPSMAIQMVGIGEESGSLEEMLDKVATYYENEVDNAVDGLTSLMEPMIMAVLGVLVGGLVIAMYLPIF
QMGSVVG
Nucleotide
Download Length: 1224 bp
>NTDB_id=252805 KSH_RS09790 WP_100285197.1 2203441..2204664(-) (pilC) [Moraxella osloensis strain KSH]
ATGGCAAAAGTCCAAACAGAAATGTTATTAGACTTTGTCTATGATGGGGTCAATCGCCGTGGCGAAAAAGTCAAAGGCGA
AACCACCAGCCGCAATATTGAGCTGGCAAAAGCGCAGCTACGTAAGCAGGGCATCAAAGTCAAGACAATTAAGAAAAAAC
CTAAGCCTATTTTTCAAATGAAAAAAAGCATCAAGGCAATTGATATTGCTATCTTTGTGCGGCAGTTGGCTACGATGATG
AAAGCAGGTGTACCGCTTACACAGTCGTTTGAAATTGTTGCAGATGCGCTCGATAACCCCTCAATGAAAGAGTTGGTGCT
TAGTGTCAAGTCAGAAGTGGAATCAGGGAGCACCTTTGCTGCAGCGCTGCGCAAACATCCTAGATATTTTGATGACTTGT
TTTGTTCATTAGTAGAGGCAGGTGAGCAATCAGGTGCGCTTGAAACTATGCTTGAGCGTGTCGCGACGTACAAAGAAAAA
AGCGAGCTACTAAAAGCAAAAATTAAAAAAGCCTTGAAATACCCGATTGCGGTTATCGTGGTTGCGATTATCGTTACCAT
TATTTTGCTAGTTAAAGTAGTTCCGGTGTTTGCTGACTTATTCCATTCATTTGGCGCAGAGTTACCTGCGTTTACCCAAA
TGGTGGTCAATATGTCGGAGTGGATGCAAAAATGGTGGTGGTTATTGCTATTTAGCATTGCAGGCGCTGTTGTTGGCTTT
TCTGAAGCTAAAAAACGTAGCAAACCCTTTAATGATTTTTTAGACCGACTTACCTTAAAATTACCAATCTTTGGCAATAT
TGCTTATCAAGCGGTGGTTGCCCGTTTTTCTCGTACTTTATCTACCACTTTTGCAGCAGGTGTGCCGCTGATTGATGCGT
TGGATTCAACCGCTGGAGCAACCAATAATGTGGTGTTTTATAATGCCACGCAAAAAATTAAAGGCGATGTTGCGACGGGT
CAACAGCTGCAGTTTTCGATGCGTTCTACTAATCTTTTTCCCAGTATGGCTATCCAAATGGTCGGTATTGGTGAAGAGTC
AGGTAGTCTAGAGGAGATGCTTGATAAAGTGGCGACTTATTATGAAAACGAAGTGGATAACGCCGTAGATGGGTTAACAA
GTCTGATGGAACCGATGATTATGGCTGTTTTGGGGGTGCTGGTAGGGGGTCTGGTGATTGCCATGTATCTACCAATTTTC
CAAATGGGCTCGGTGGTGGGCTAA
ATGGCAAAAGTCCAAACAGAAATGTTATTAGACTTTGTCTATGATGGGGTCAATCGCCGTGGCGAAAAAGTCAAAGGCGA
AACCACCAGCCGCAATATTGAGCTGGCAAAAGCGCAGCTACGTAAGCAGGGCATCAAAGTCAAGACAATTAAGAAAAAAC
CTAAGCCTATTTTTCAAATGAAAAAAAGCATCAAGGCAATTGATATTGCTATCTTTGTGCGGCAGTTGGCTACGATGATG
AAAGCAGGTGTACCGCTTACACAGTCGTTTGAAATTGTTGCAGATGCGCTCGATAACCCCTCAATGAAAGAGTTGGTGCT
TAGTGTCAAGTCAGAAGTGGAATCAGGGAGCACCTTTGCTGCAGCGCTGCGCAAACATCCTAGATATTTTGATGACTTGT
TTTGTTCATTAGTAGAGGCAGGTGAGCAATCAGGTGCGCTTGAAACTATGCTTGAGCGTGTCGCGACGTACAAAGAAAAA
AGCGAGCTACTAAAAGCAAAAATTAAAAAAGCCTTGAAATACCCGATTGCGGTTATCGTGGTTGCGATTATCGTTACCAT
TATTTTGCTAGTTAAAGTAGTTCCGGTGTTTGCTGACTTATTCCATTCATTTGGCGCAGAGTTACCTGCGTTTACCCAAA
TGGTGGTCAATATGTCGGAGTGGATGCAAAAATGGTGGTGGTTATTGCTATTTAGCATTGCAGGCGCTGTTGTTGGCTTT
TCTGAAGCTAAAAAACGTAGCAAACCCTTTAATGATTTTTTAGACCGACTTACCTTAAAATTACCAATCTTTGGCAATAT
TGCTTATCAAGCGGTGGTTGCCCGTTTTTCTCGTACTTTATCTACCACTTTTGCAGCAGGTGTGCCGCTGATTGATGCGT
TGGATTCAACCGCTGGAGCAACCAATAATGTGGTGTTTTATAATGCCACGCAAAAAATTAAAGGCGATGTTGCGACGGGT
CAACAGCTGCAGTTTTCGATGCGTTCTACTAATCTTTTTCCCAGTATGGCTATCCAAATGGTCGGTATTGGTGAAGAGTC
AGGTAGTCTAGAGGAGATGCTTGATAAAGTGGCGACTTATTATGAAAACGAAGTGGATAACGCCGTAGATGGGTTAACAA
GTCTGATGGAACCGATGATTATGGCTGTTTTGGGGGTGCTGGTAGGGGGTCTGGTGATTGCCATGTATCTACCAATTTTC
CAAATGGGCTCGGTGGTGGGCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Acinetobacter baumannii D1279779 |
70.588 |
100 |
0.708 |
| pilC | Acinetobacter baylyi ADP1 |
69.118 |
100 |
0.693 |
| pilC | Pseudomonas stutzeri DSM 10701 |
64.557 |
97.052 |
0.627 |
| pilC | Legionella pneumophila strain ERS1305867 |
55.639 |
98.034 |
0.545 |
| pilC | Vibrio cholerae strain A1552 |
43.382 |
100 |
0.435 |
| pilG | Neisseria gonorrhoeae MS11 |
44.444 |
97.297 |
0.432 |
| pilG | Neisseria meningitidis 44/76-A |
44.192 |
97.297 |
0.43 |
| pilC | Vibrio campbellii strain DS40M4 |
41.75 |
98.28 |
0.41 |