Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   B9S66_RS24530 Genome accession   NZ_CP029338
Coordinates   5570374..5571159 (-) Length   261 a.a.
NCBI ID   WP_003951282.1    Uniprot ID   A0ABR4S5N7
Organism   Streptomyces sp. SM17     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5565374..5576159
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B9S66_RS24520 (B9S66_24520) - 5566342..5568204 (+) 1863 WP_030310000.1 IucA/IucC family siderophore biosynthesis protein -
  B9S66_RS24525 (B9S66_24525) - 5568291..5570279 (+) 1989 WP_003951281.1 ATP-dependent DNA helicase -
  B9S66_RS24530 (B9S66_24530) dinR/lexA 5570374..5571159 (-) 786 WP_003951282.1 transcriptional repressor LexA Regulator
  B9S66_RS24535 (B9S66_24535) nrdR 5571782..5572294 (+) 513 WP_003951283.1 transcriptional regulator NrdR -
  B9S66_RS24540 (B9S66_24540) - 5572432..5575302 (+) 2871 WP_008410831.1 vitamin B12-dependent ribonucleotide reductase -

Sequence

Protein


Download         Length: 261 a.a.        Molecular weight: 28190.95 Da        Isoelectric Point: 8.9090

>NTDB_id=252804 B9S66_RS24530 WP_003951282.1 5570374..5571159(-) (dinR/lexA) [Streptomyces sp. SM17]
MTTTADSATITAQGRSQGRRESVHAMNEPASPQEGAKPARSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYPPSM
REIGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQPSAQPADTTGKPAASYVPLVGRIAAGGPILAEESV
EDVFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDNHIWLLPHNAAY
QPIPGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 786 bp        

>NTDB_id=252804 B9S66_RS24530 WP_003951282.1 5570374..5571159(-) (dinR/lexA) [Streptomyces sp. SM17]
GTGACCACGACCGCAGACAGCGCCACCATCACCGCCCAGGGCCGGTCCCAGGGACGACGGGAGTCGGTGCACGCCATGAA
TGAGCCCGCCTCGCCCCAGGAGGGGGCGAAGCCCGCCCGCTCGCTCCCCGGACGACCTCCGGGCATCCGCGCGGACAGCT
CAGGACTGACCGACCGGCAGCGCCGCGTGATCGAGGTCATCCGCGACTCGGTGCAGCGCCGCGGCTACCCGCCGTCGATG
CGGGAGATCGGGCAGGCCGTCGGCCTCTCCAGCACCTCCTCGGTGGCCCACCAGCTGATGGCCCTGGAGCGCAAGGGCTT
CCTCCGCCGCGACCCGCATCGCCCCCGGGCGTACGAGGTGCGCGGCTCCGACCAGCCGAGCGCGCAGCCCGCGGACACCA
CGGGCAAGCCCGCCGCCTCCTACGTGCCGCTGGTCGGCCGGATCGCGGCCGGCGGGCCGATCCTCGCCGAGGAGTCGGTC
GAGGACGTCTTCCCCCTCCCCCGCCAGCTGGTCGGCGACGGTGAGCTCTTCGTGCTCAAGGTCGTCGGTGACTCCATGAT
CGAGGCGGCGATCTGCGACGGCGACTGGGTCACCGTCCGCCGCCAGCCCGTCGCGGAGAACGGCGACATCGTCGCCGCGA
TGCTGGACGGCGAGGCCACCGTGAAGCGGTTCAAGCGCGAGGACAACCACATCTGGCTCCTCCCGCACAACGCGGCCTAC
CAGCCGATCCCCGGCGACGAGGCCACCATCCTCGGCAAGGTCGTCGCGGTCCTGCGGCGGGTCTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(143-255)

LexA DNA binding domain (LexA_DNA_bind)

(54-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.698

81.226

0.379

Multiple sequence alignment