Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   KSH_RS09785 Genome accession   NZ_CP024180
Coordinates   2202560..2203435 (-) Length   291 a.a.
NCBI ID   WP_100285196.1    Uniprot ID   -
Organism   Moraxella osloensis strain KSH     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2197560..2208435
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KSH_RS09765 (KSH_11030) nfuA 2198354..2198971 (-) 618 WP_096489426.1 Fe-S biogenesis protein NfuA -
  KSH_RS09770 (KSH_11035) - 2199270..2200373 (+) 1104 WP_173846733.1 bifunctional nicotinamide-nucleotide adenylyltransferase/Nudix hydroxylase -
  KSH_RS09775 (KSH_11040) - 2200443..2201849 (+) 1407 WP_100285195.1 nicotinate phosphoribosyltransferase -
  KSH_RS09780 (KSH_11045) coaE 2201907..2202563 (-) 657 WP_227522751.1 dephospho-CoA kinase -
  KSH_RS09785 (KSH_11050) pilD 2202560..2203435 (-) 876 WP_100285196.1 A24 family peptidase Machinery gene
  KSH_RS09790 (KSH_11055) pilC 2203441..2204664 (-) 1224 WP_100285197.1 type II secretion system F family protein Machinery gene
  KSH_RS09795 (KSH_11060) pilB 2204721..2206427 (-) 1707 WP_100285198.1 type IV-A pilus assembly ATPase PilB Machinery gene
  KSH_RS09800 (KSH_11065) tpiA 2206846..2207685 (+) 840 WP_100285199.1 triose-phosphate isomerase -
  KSH_RS09805 (KSH_11070) secG 2207777..2208097 (+) 321 WP_065253803.1 preprotein translocase subunit SecG -

Sequence

Protein


Download         Length: 291 a.a.        Molecular weight: 32197.67 Da        Isoelectric Point: 8.1699

>NTDB_id=252804 KSH_RS09785 WP_100285196.1 2202560..2203435(-) (pilD) [Moraxella osloensis strain KSH]
MGIFSDFILLLQQSQWLTLIMVSILGLCVGSFLNVVIYRTPLMMEQQWKSECQLLLHPESVIDNHESMTLSRPASRCPHC
GHSIRWFENMPVISWLLLKGKCSQCHHAISYRYPLVEIITAILSVLVVMKFGVTWQALAGLALTWTLVALTGIDFDTQLL
PDRLTLPLAGLGLFVNAFGLFVSPTAAIFGYVFGFLCLWIVYQLFLLITGKHGMGHGDFKLLAALGAWLGPLMLPLIVLL
SAFVGSVVGVILMKRSGESKPFAFGPYIAIAGMIALLYGQPIMSWYLGKMS

Nucleotide


Download         Length: 876 bp        

>NTDB_id=252804 KSH_RS09785 WP_100285196.1 2202560..2203435(-) (pilD) [Moraxella osloensis strain KSH]
ATGGGGATTTTTTCAGATTTTATTTTGTTACTACAACAGTCGCAATGGCTGACGTTGATTATGGTATCAATCTTGGGCTT
GTGTGTGGGTAGTTTTTTAAATGTGGTGATTTATCGCACGCCTTTGATGATGGAGCAGCAGTGGAAGAGCGAATGCCAGC
TATTGCTTCATCCAGAAAGCGTTATTGACAATCATGAATCGATGACCTTAAGCCGTCCTGCTTCTCGTTGCCCGCATTGT
GGGCATTCAATACGTTGGTTTGAAAATATGCCTGTTATTAGTTGGCTACTGCTAAAAGGAAAATGTAGTCAGTGTCATCA
CGCCATTAGTTATCGCTATCCGCTTGTGGAAATCATCACTGCTATTTTATCTGTGCTGGTGGTGATGAAATTTGGTGTTA
CTTGGCAAGCGCTGGCAGGATTAGCACTCACATGGACATTAGTTGCTTTAACAGGCATTGATTTTGATACCCAATTGTTA
CCTGACCGATTGACATTGCCGTTAGCGGGACTGGGCTTATTTGTCAATGCCTTTGGCTTATTTGTTAGCCCCACAGCGGC
TATTTTTGGCTATGTGTTTGGGTTTTTATGCCTGTGGATTGTCTACCAATTGTTTTTGCTTATTACGGGCAAGCACGGGA
TGGGACATGGCGATTTTAAATTATTAGCGGCTTTGGGGGCTTGGCTAGGGCCTTTGATGCTACCGTTAATTGTGCTTTTA
TCTGCGTTTGTCGGCTCGGTTGTGGGTGTGATATTGATGAAGCGCTCAGGTGAAAGCAAACCTTTTGCTTTTGGACCTTA
TATCGCGATTGCTGGCATGATAGCACTTTTGTATGGGCAACCAATAATGTCGTGGTATCTAGGTAAAATGTCATGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(142-250)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(24-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter baumannii D1279779

62.324

97.595

0.608
  pilD Acinetobacter nosocomialis M2

62.324

97.595

0.608
  pilD Vibrio campbellii strain DS40M4

49.11

96.564

0.474
  pilD Vibrio cholerae strain A1552

48.905

94.158

0.46
  pilD Neisseria gonorrhoeae MS11

44.444

92.784

0.412

Multiple sequence alignment