Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | YHS_RS09955 | Genome accession | NZ_CP024176 |
| Coordinates | 2262500..2263723 (-) | Length | 407 a.a. |
| NCBI ID | WP_100274138.1 | Uniprot ID | A0AAD0AWW8 |
| Organism | Moraxella osloensis strain YHS | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2257500..2268723
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| YHS_RS09935 (YHS_11075) | - | 2258329..2259432 (+) | 1104 | WP_227522655.1 | bifunctional nicotinamide-nucleotide adenylyltransferase/Nudix hydroxylase | - |
| YHS_RS09940 (YHS_11080) | - | 2259502..2260908 (+) | 1407 | WP_007115073.1 | nicotinate phosphoribosyltransferase | - |
| YHS_RS09945 (YHS_11085) | coaE | 2260966..2261574 (-) | 609 | WP_100274136.1 | dephospho-CoA kinase | - |
| YHS_RS09950 (YHS_11090) | pilD | 2261619..2262473 (-) | 855 | WP_157797036.1 | prepilin peptidase | Machinery gene |
| YHS_RS09955 (YHS_11095) | pilC | 2262500..2263723 (-) | 1224 | WP_100274138.1 | type II secretion system F family protein | Machinery gene |
| YHS_RS09960 (YHS_11100) | pilB | 2263780..2265486 (-) | 1707 | WP_100274139.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| YHS_RS09965 (YHS_11105) | tpiA | 2265909..2266763 (+) | 855 | WP_100274140.1 | triose-phosphate isomerase | - |
| YHS_RS09970 (YHS_11110) | secG | 2266854..2267174 (+) | 321 | WP_062332397.1 | preprotein translocase subunit SecG | - |
| YHS_RS09985 (YHS_11125) | rimP | 2267738..2268247 (+) | 510 | WP_100270612.1 | ribosome maturation factor RimP | - |
Sequence
Protein
Download Length: 407 a.a. Molecular weight: 44876.84 Da Isoelectric Point: 9.5933
>NTDB_id=252788 YHS_RS09955 WP_100274138.1 2262500..2263723(-) (pilC) [Moraxella osloensis strain YHS]
MAKVQTEMLLDFVYDGVNRRGEKVKGETTSRNIELAKAQLRKQGIQVKTIKKKPKPIFQMKKSIKPIDIAIFVRQLATMM
KAGVPLTQSFEIVADALDNPSMKELVLSVKSEVESGSTFAAALRKHPRYFDDLFCSLVEAGEQSGALETMLERVATYKEK
SELLKAKIKKALKYPIAVIVVAIIVTIILLVKVVPVFADLFHSFGAELPAFTQMVVNMSEWMQKWWWLLLFSIAGAVVGF
SEAKKRSKPFNDFLDRLTLKLPIFGNIAYQAVVARFSRTLSTTFAAGVPLIDALDSTAGATNNVVFYNATQKIKGDVATG
QQLQFSMRSTNLFPSMAIQMVGIGEESGSLEEMLDKVATYYENEVDNAVDGLTSLMEPMIMAVLGVLVGGLVIAMYLPIF
QMGSVVG
MAKVQTEMLLDFVYDGVNRRGEKVKGETTSRNIELAKAQLRKQGIQVKTIKKKPKPIFQMKKSIKPIDIAIFVRQLATMM
KAGVPLTQSFEIVADALDNPSMKELVLSVKSEVESGSTFAAALRKHPRYFDDLFCSLVEAGEQSGALETMLERVATYKEK
SELLKAKIKKALKYPIAVIVVAIIVTIILLVKVVPVFADLFHSFGAELPAFTQMVVNMSEWMQKWWWLLLFSIAGAVVGF
SEAKKRSKPFNDFLDRLTLKLPIFGNIAYQAVVARFSRTLSTTFAAGVPLIDALDSTAGATNNVVFYNATQKIKGDVATG
QQLQFSMRSTNLFPSMAIQMVGIGEESGSLEEMLDKVATYYENEVDNAVDGLTSLMEPMIMAVLGVLVGGLVIAMYLPIF
QMGSVVG
Nucleotide
Download Length: 1224 bp
>NTDB_id=252788 YHS_RS09955 WP_100274138.1 2262500..2263723(-) (pilC) [Moraxella osloensis strain YHS]
ATGGCAAAAGTCCAAACAGAAATGTTATTAGACTTTGTCTATGATGGGGTCAATCGCCGTGGCGAAAAAGTCAAAGGCGA
AACCACCAGCCGCAATATTGAGCTGGCAAAAGCGCAACTACGCAAGCAAGGCATCCAAGTCAAGACGATTAAGAAAAAAC
CTAAGCCTATTTTTCAAATGAAAAAAAGCATCAAGCCAATTGATATTGCTATCTTTGTGCGGCAGTTGGCTACGATGATG
AAAGCAGGTGTACCGCTTACACAGTCGTTTGAAATTGTTGCAGATGCGCTCGATAACCCCTCAATGAAAGAGTTGGTGCT
TAGTGTCAAGTCAGAAGTGGAATCAGGGAGCACCTTTGCTGCAGCGCTGCGCAAACATCCTAGATATTTTGATGACTTGT
TTTGTTCATTAGTAGAGGCAGGTGAGCAATCAGGTGCGCTTGAAACTATGCTTGAGCGTGTCGCGACGTACAAAGAAAAA
AGCGAGCTACTAAAAGCAAAAATTAAAAAAGCCTTGAAATACCCGATTGCGGTTATCGTGGTTGCGATTATCGTTACCAT
TATTTTGCTAGTTAAAGTAGTTCCGGTGTTTGCTGACTTATTCCATTCATTTGGCGCAGAGTTACCTGCGTTTACCCAAA
TGGTGGTCAATATGTCGGAGTGGATGCAAAAATGGTGGTGGTTATTGCTATTTAGCATTGCAGGCGCTGTTGTTGGCTTT
TCTGAAGCTAAAAAACGTAGCAAACCCTTTAATGATTTTTTAGACCGACTTACCTTAAAATTACCAATCTTTGGCAATAT
TGCTTATCAAGCGGTGGTTGCCCGTTTTTCTCGTACTTTATCTACCACTTTTGCAGCAGGTGTGCCGCTGATTGATGCGT
TAGATTCAACCGCTGGAGCAACCAATAATGTGGTGTTTTATAATGCCACGCAAAAAATTAAAGGCGATGTTGCGACGGGT
CAACAGCTGCAGTTTTCGATGCGTTCTACTAATCTTTTTCCCAGTATGGCTATCCAAATGGTCGGTATTGGTGAAGAGTC
AGGTAGTCTAGAGGAGATGCTTGATAAAGTGGCGACTTATTATGAAAACGAAGTGGATAACGCCGTAGATGGGTTAACAA
GTCTGATGGAACCGATGATTATGGCTGTTTTGGGGGTGCTGGTAGGGGGTCTGGTGATTGCCATGTATCTACCAATTTTC
CAAATGGGCTCGGTGGTGGGCTAG
ATGGCAAAAGTCCAAACAGAAATGTTATTAGACTTTGTCTATGATGGGGTCAATCGCCGTGGCGAAAAAGTCAAAGGCGA
AACCACCAGCCGCAATATTGAGCTGGCAAAAGCGCAACTACGCAAGCAAGGCATCCAAGTCAAGACGATTAAGAAAAAAC
CTAAGCCTATTTTTCAAATGAAAAAAAGCATCAAGCCAATTGATATTGCTATCTTTGTGCGGCAGTTGGCTACGATGATG
AAAGCAGGTGTACCGCTTACACAGTCGTTTGAAATTGTTGCAGATGCGCTCGATAACCCCTCAATGAAAGAGTTGGTGCT
TAGTGTCAAGTCAGAAGTGGAATCAGGGAGCACCTTTGCTGCAGCGCTGCGCAAACATCCTAGATATTTTGATGACTTGT
TTTGTTCATTAGTAGAGGCAGGTGAGCAATCAGGTGCGCTTGAAACTATGCTTGAGCGTGTCGCGACGTACAAAGAAAAA
AGCGAGCTACTAAAAGCAAAAATTAAAAAAGCCTTGAAATACCCGATTGCGGTTATCGTGGTTGCGATTATCGTTACCAT
TATTTTGCTAGTTAAAGTAGTTCCGGTGTTTGCTGACTTATTCCATTCATTTGGCGCAGAGTTACCTGCGTTTACCCAAA
TGGTGGTCAATATGTCGGAGTGGATGCAAAAATGGTGGTGGTTATTGCTATTTAGCATTGCAGGCGCTGTTGTTGGCTTT
TCTGAAGCTAAAAAACGTAGCAAACCCTTTAATGATTTTTTAGACCGACTTACCTTAAAATTACCAATCTTTGGCAATAT
TGCTTATCAAGCGGTGGTTGCCCGTTTTTCTCGTACTTTATCTACCACTTTTGCAGCAGGTGTGCCGCTGATTGATGCGT
TAGATTCAACCGCTGGAGCAACCAATAATGTGGTGTTTTATAATGCCACGCAAAAAATTAAAGGCGATGTTGCGACGGGT
CAACAGCTGCAGTTTTCGATGCGTTCTACTAATCTTTTTCCCAGTATGGCTATCCAAATGGTCGGTATTGGTGAAGAGTC
AGGTAGTCTAGAGGAGATGCTTGATAAAGTGGCGACTTATTATGAAAACGAAGTGGATAACGCCGTAGATGGGTTAACAA
GTCTGATGGAACCGATGATTATGGCTGTTTTGGGGGTGCTGGTAGGGGGTCTGGTGATTGCCATGTATCTACCAATTTTC
CAAATGGGCTCGGTGGTGGGCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Acinetobacter baumannii D1279779 |
70.588 |
100 |
0.708 |
| pilC | Acinetobacter baylyi ADP1 |
69.363 |
100 |
0.695 |
| pilC | Pseudomonas stutzeri DSM 10701 |
64.81 |
97.052 |
0.629 |
| pilC | Legionella pneumophila strain ERS1305867 |
55.639 |
98.034 |
0.545 |
| pilC | Vibrio cholerae strain A1552 |
43.627 |
100 |
0.437 |
| pilG | Neisseria gonorrhoeae MS11 |
44.361 |
98.034 |
0.435 |
| pilG | Neisseria meningitidis 44/76-A |
44.11 |
98.034 |
0.432 |
| pilC | Vibrio campbellii strain DS40M4 |
41.5 |
98.28 |
0.408 |