Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   YHS_RS09950 Genome accession   NZ_CP024176
Coordinates   2261619..2262473 (-) Length   284 a.a.
NCBI ID   WP_157797036.1    Uniprot ID   -
Organism   Moraxella osloensis strain YHS     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2256619..2267473
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  YHS_RS09930 (YHS_11070) nfuA 2257414..2258031 (-) 618 WP_100274135.1 Fe-S biogenesis protein NfuA -
  YHS_RS09935 (YHS_11075) - 2258329..2259432 (+) 1104 WP_227522655.1 bifunctional nicotinamide-nucleotide adenylyltransferase/Nudix hydroxylase -
  YHS_RS09940 (YHS_11080) - 2259502..2260908 (+) 1407 WP_007115073.1 nicotinate phosphoribosyltransferase -
  YHS_RS09945 (YHS_11085) coaE 2260966..2261574 (-) 609 WP_100274136.1 dephospho-CoA kinase -
  YHS_RS09950 (YHS_11090) pilD 2261619..2262473 (-) 855 WP_157797036.1 prepilin peptidase Machinery gene
  YHS_RS09955 (YHS_11095) pilC 2262500..2263723 (-) 1224 WP_100274138.1 type II secretion system F family protein Machinery gene
  YHS_RS09960 (YHS_11100) pilB 2263780..2265486 (-) 1707 WP_100274139.1 type IV-A pilus assembly ATPase PilB Machinery gene
  YHS_RS09965 (YHS_11105) tpiA 2265909..2266763 (+) 855 WP_100274140.1 triose-phosphate isomerase -
  YHS_RS09970 (YHS_11110) secG 2266854..2267174 (+) 321 WP_062332397.1 preprotein translocase subunit SecG -

Sequence

Protein


Download         Length: 284 a.a.        Molecular weight: 31441.82 Da        Isoelectric Point: 8.3835

>NTDB_id=252787 YHS_RS09950 WP_157797036.1 2261619..2262473(-) (pilD) [Moraxella osloensis strain YHS]
MLLLQQSQWLTLIIVALLGLCVGSFLNVVIYRTPLMMEQQWKSECQLLLHPETVIDNHESITLSRPASRCPHCGHSIRWF
ENMPVISWLLLKGKCSQCHHAISYRYPLVEIITAILSVLVVMKFGVTWQTLAGLALTWTLVALTGIDFDTQLLPDRLTLP
LAGLGLFVNAFGLFVSPTAAIFGYVFGFLCLWIVYQLFLLITGKHGMGHGDFKLLAALGAWLGPLMLPLIVLLSAFVGSV
VGLMLMKRSGESKPFAFGPYIAIAGMIALLYGQPIMSWYLGKMS

Nucleotide


Download         Length: 855 bp        

>NTDB_id=252787 YHS_RS09950 WP_157797036.1 2261619..2262473(-) (pilD) [Moraxella osloensis strain YHS]
ATGTTGTTATTACAACAGTCGCAATGGCTGACGTTGATTATCGTAGCTTTATTGGGATTATGCGTGGGTAGTTTTTTAAA
TGTGGTGATTTATCGCACGCCTTTGATGATGGAACAGCAGTGGAAGAGCGAATGCCAGCTATTGCTTCATCCAGAAACCG
TTATTGACAATCATGAATCCATTACCTTAAGCCGTCCCGCCTCTCGTTGCCCGCATTGTGGGCATTCAATACGTTGGTTT
GAAAATATGCCTGTTATTAGTTGGCTGCTGCTAAAAGGGAAATGTAGTCAGTGTCATCACGCCATTAGTTATCGCTATCC
GCTTGTAGAAATCATCACTGCTATTTTGTCTGTGCTGGTGGTGATGAAATTTGGCGTTACTTGGCAAACGCTGGCAGGAT
TGGCGCTCACATGGACATTAGTGGCTTTAACAGGTATTGATTTTGATACCCAATTGTTGCCTGACCGATTGACATTGCCG
TTAGCGGGATTAGGATTATTCGTCAATGCCTTTGGCTTGTTTGTCAGTCCCACAGCGGCTATTTTTGGCTATGTGTTTGG
GTTTTTATGCCTGTGGATTGTCTACCAATTGTTTTTGCTTATTACGGGCAAGCACGGGATGGGACATGGCGATTTTAAAT
TATTAGCGGCTTTGGGGGCTTGGCTAGGGCCTTTGATGCTACCGTTAATTGTGCTTTTATCTGCGTTTGTCGGCTCGGTT
GTGGGTTTGATGCTGATGAAGCGCTCAGGTGAAAGCAAACCTTTTGCTTTTGGACCTTATATCGCGATTGCTGGCATGAT
AGCACTTTTGTATGGGCAACCAATAATGTCGTGGTATCTAGGTAAAATGTCATAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(135-243)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(17-124)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter baumannii D1279779

65.056

94.718

0.616
  pilD Acinetobacter nosocomialis M2

65.056

94.718

0.616
  pilD Vibrio campbellii strain DS40M4

49.117

99.648

0.489
  pilD Vibrio cholerae strain A1552

48.727

96.831

0.472
  pilD Neisseria gonorrhoeae MS11

45.185

95.07

0.43

Multiple sequence alignment