Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   CLA18_RS27955 Genome accession   NZ_CP024025
Coordinates   6188714..6189931 (+) Length   405 a.a.
NCBI ID   WP_265577524.1    Uniprot ID   -
Organism   Pseudomonas protegens strain DTU9.1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6183714..6194931
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CLA18_RS27940 (CLA18_27845) - 6184254..6187172 (+) 2919 WP_210458062.1 DUF748 domain-containing protein -
  CLA18_RS27945 (CLA18_27850) - 6187383..6187739 (-) 357 WP_011063519.1 BON domain-containing protein -
  CLA18_RS27950 (CLA18_27855) - 6187968..6188384 (-) 417 WP_265577523.1 pilin -
  CLA18_RS27955 (CLA18_27860) pilC 6188714..6189931 (+) 1218 WP_265577524.1 type II secretion system F family protein Machinery gene
  CLA18_RS27960 (CLA18_27865) pilD 6189934..6190806 (+) 873 WP_019093221.1 A24 family peptidase Machinery gene
  CLA18_RS27965 (CLA18_27870) coaE 6190803..6191426 (+) 624 WP_265577525.1 dephospho-CoA kinase -
  CLA18_RS27970 (CLA18_27875) yacG 6191423..6191626 (+) 204 WP_047289273.1 DNA gyrase inhibitor YacG -
  CLA18_RS27975 (CLA18_27880) - 6191646..6191861 (-) 216 WP_011063525.1 hypothetical protein -
  CLA18_RS27980 (CLA18_27885) - 6191925..6192614 (-) 690 WP_047289276.1 energy-coupling factor ABC transporter permease -
  CLA18_RS27985 (CLA18_27890) - 6192611..6193078 (-) 468 WP_026019989.1 hypothetical protein -
  CLA18_RS27990 (CLA18_27895) - 6193222..6193851 (+) 630 WP_011063528.1 DUF1780 domain-containing protein -
  CLA18_RS27995 (CLA18_27900) - 6194041..6194214 (+) 174 WP_053153937.1 DUF3094 family protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 43832.44 Da        Isoelectric Point: 10.5006

>NTDB_id=251280 CLA18_RS27955 WP_265577524.1 6188714..6189931(+) (pilC) [Pseudomonas protegens strain DTU9.1]
MAVKAPATSVYLWHGTDSQGRPLTGELSAATSALIRAQLRRQGITPTRVRRKPKGWLRLHQRVGARDIALLTRQLATLMQ
AGVPLLQSFDIIAESFEHPQMRQLLASLKRDIEAGSSLATALRRQPRHFDPLYCNLVDAGEQAGALDTLLERVATYKEKS
ENLKARLKKAMVYPLAVIGVAVVVSSILLLKVVPQFQSLFAGFNAELPLLTQWVIALSHFIQQQGALLLAAGVLGGLAAR
LAYQRSPNLRDRLDVGLLHMPLAGPLLHKSAVARYARTLATTFAAGVPLVQALDSVAGASGNPVFRQAVQRIRQQVAAGM
QLNFAMRASGVFPTMAIQMTAIGEESGTLDHLLEKVAIHYEVEVDNLVDSLTSLMEPLIMVVLGGIVGALVVAMYLPIFQ
LGTAI

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=251280 CLA18_RS27955 WP_265577524.1 6188714..6189931(+) (pilC) [Pseudomonas protegens strain DTU9.1]
ATGGCGGTAAAAGCACCCGCGACCAGTGTCTATCTCTGGCACGGCACCGACAGCCAGGGCCGCCCCCTCACTGGAGAACT
CAGCGCCGCGACCTCGGCCCTGATCAGGGCGCAATTGCGCAGACAGGGCATCACCCCAACCCGAGTCCGACGCAAACCCA
AGGGCTGGCTGCGCCTGCATCAGCGAGTAGGGGCACGGGACATTGCCCTGCTCACCCGGCAGTTGGCCACGCTGATGCAG
GCCGGGGTGCCGCTGCTGCAATCCTTCGACATCATTGCCGAAAGTTTCGAGCATCCGCAGATGCGCCAACTGCTGGCCAG
CCTCAAGCGCGACATCGAGGCCGGCTCCAGCCTGGCCACGGCATTGCGCAGACAACCACGCCACTTCGACCCGCTGTACT
GCAACCTGGTGGACGCCGGCGAGCAGGCCGGCGCCCTGGATACCCTGCTGGAGAGAGTCGCCACCTATAAGGAAAAGAGC
GAGAACCTGAAGGCGCGGCTGAAGAAAGCCATGGTCTATCCCTTGGCGGTGATCGGCGTGGCGGTCGTGGTCAGCAGCAT
CCTGCTGCTCAAGGTGGTCCCCCAGTTCCAGAGCTTGTTCGCCGGTTTCAATGCCGAGTTGCCACTGCTCACCCAGTGGG
TCATCGCTCTGTCACATTTCATCCAGCAGCAGGGGGCGCTGCTGCTGGCCGCCGGTGTGCTGGGCGGGCTTGCGGCGCGC
CTGGCCTATCAGCGCTCCCCGAACTTGCGTGACCGCCTGGATGTCGGCCTTTTGCACATGCCCCTGGCCGGGCCACTGCT
GCACAAATCCGCGGTGGCCCGCTACGCACGGACCCTGGCCACCACCTTCGCCGCCGGCGTTCCCCTGGTGCAGGCCCTGG
ATTCAGTGGCCGGAGCCAGCGGCAACCCAGTCTTCAGGCAAGCGGTGCAACGGATCCGCCAGCAGGTCGCCGCCGGCATG
CAATTGAACTTTGCCATGCGCGCCAGCGGCGTCTTCCCGACCATGGCGATCCAGATGACCGCCATCGGCGAAGAGTCCGG
AACCCTGGATCATCTGCTGGAAAAAGTCGCGATCCATTACGAGGTCGAGGTGGACAACCTGGTGGACAGCCTGACCAGCC
TCATGGAGCCGTTGATCATGGTGGTCCTGGGGGGTATCGTCGGCGCCCTGGTGGTTGCCATGTACCTGCCTATCTTCCAA
CTCGGTACAGCGATCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(72-194)

Type II secretion system (T2SS), protein F (T2SSF)

(276-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

58.519

100

0.585
  pilC Acinetobacter baylyi ADP1

53.056

100

0.536
  pilC Acinetobacter baumannii D1279779

53.186

100

0.536
  pilC Legionella pneumophila strain ERS1305867

46.814

100

0.472
  pilG Neisseria gonorrhoeae MS11

42.289

99.259

0.42
  pilG Neisseria meningitidis 44/76-A

42.394

99.012

0.42
  pilC Vibrio cholerae strain A1552

42.602

96.79

0.412
  pilC Vibrio campbellii strain DS40M4

41.294

99.259

0.41
  pilC Thermus thermophilus HB27

38

98.765

0.375

Multiple sequence alignment