Detailed information NTG0251281

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: CLA18_RS27960
• Genome accession: NZ_CP024025
• Coordinates: 6189934..6190806 (+)
• Length: 290 a.a.
• NCBI ID: WP_019093221.1
• Uniprot ID: -
• Organism: Pseudomonas protegens strain DTU9.1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 6184934..6195806

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CLA18_RS27945 (CLA18_27850)	-	6187383..6187739 (-)	357	WP_011063519.1	BON domain-containing protein	-
CLA18_RS27950 (CLA18_27855)	-	6187968..6188384 (-)	417	WP_265577523.1	pilin	-
CLA18_RS27955 (CLA18_27860)	pilC	6188714..6189931 (+)	1218	WP_265577524.1	type II secretion system F family protein	Machinery gene
CLA18_RS27960 (CLA18_27865)	pilD	6189934..6190806 (+)	873	WP_019093221.1	A24 family peptidase	Machinery gene
CLA18_RS27965 (CLA18_27870)	coaE	6190803..6191426 (+)	624	WP_265577525.1	dephospho-CoA kinase	-
CLA18_RS27970 (CLA18_27875)	yacG	6191423..6191626 (+)	204	WP_047289273.1	DNA gyrase inhibitor YacG	-
CLA18_RS27975 (CLA18_27880)	-	6191646..6191861 (-)	216	WP_011063525.1	hypothetical protein	-
CLA18_RS27980 (CLA18_27885)	-	6191925..6192614 (-)	690	WP_047289276.1	energy-coupling factor ABC transporter permease	-
CLA18_RS27985 (CLA18_27890)	-	6192611..6193078 (-)	468	WP_026019989.1	hypothetical protein	-
CLA18_RS27990 (CLA18_27895)	-	6193222..6193851 (+)	630	WP_011063528.1	DUF1780 domain-containing protein	-
CLA18_RS27995 (CLA18_27900)	-	6194041..6194214 (+)	174	WP_053153937.1	DUF3094 family protein	-
CLA18_RS28000 (CLA18_27905)	-	6194275..6195573 (+)	1299	WP_011063529.1	NAD(P)/FAD-dependent oxidoreductase	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32178.37 Da
• Isoelectric Point: 7.0180

>NTDB_id=251281 CLA18_RS27960 WP_019093221.1 6189934..6190806(+) (pilD) [Pseudomonas protegens strain DTU9.1]
MPLTDALTLYPMAFVAAALVLGLIVGSFLNVLVWRLPKMLERDWRAQARDVLGLEPEPVAAPYNLMLPHSQCPHCAQAIR
PWENIPLLSYLWLRGRCAHCNSSISPRYPLTELACGLISGFIAWHFGFGWAAGLMLILSWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANSFGLLISLEDALWGTVIGYLFLWSVFWLFKLLTGKEGMGHGDFKLLALFGAWGGWQILPLTLLLSSLLG
AILGTILLRLRREKTSTPIPFGPFLAIAGWIALLWGGQITDFYLQFVGFQ

Nucleotide

• Length: 873 bp

>NTDB_id=251281 CLA18_RS27960 WP_019093221.1 6189934..6190806(+) (pilD) [Pseudomonas protegens strain DTU9.1]
ATGCCCCTGACTGACGCCCTCACTCTCTACCCCATGGCCTTCGTGGCTGCGGCCCTGGTATTGGGCCTGATCGTCGGCAG
CTTTCTCAACGTGCTGGTGTGGCGCCTGCCGAAAATGCTCGAACGCGACTGGCGAGCCCAGGCCCGCGACGTACTGGGGC
TGGAGCCGGAACCTGTGGCTGCGCCCTACAACCTGATGCTGCCGCACTCCCAGTGCCCGCACTGTGCGCAGGCGATCCGC
CCCTGGGAAAACATTCCGCTGCTCAGTTACCTGTGGCTACGTGGCCGCTGCGCCCACTGCAATAGCTCCATCAGCCCGCG
CTACCCGTTGACCGAACTGGCCTGCGGGCTGATCTCGGGTTTTATCGCCTGGCACTTCGGCTTCGGCTGGGCGGCCGGGC
TGATGCTGATCCTCAGCTGGGGGCTGCTGGCAATGAGCCTGATCGACGCCGATCACCAACTGCTGCCGGATGTGCTGGTG
CTGCCACTGTTGTGGCTGGGGCTGATCGCCAACAGCTTCGGCCTGCTGATCAGCCTGGAGGATGCGCTGTGGGGGACGGT
GATCGGCTACCTGTTCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGCTGACCGGCAAGGAGGGCATGGGCCACGGTGATT
TCAAGCTGCTGGCCCTGTTCGGGGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACTCTGCTGCTGTCATCCCTGTTGGGG
GCGATTCTCGGCACGATCCTGCTGCGCCTGCGCCGGGAAAAGACCTCGACGCCAATCCCCTTTGGACCCTTTCTGGCCAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTCTATCTGCAGTTTGTCGGTTTCCAATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (136-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	53.737	96.897	0.521
pilD	Acinetobacter baumannii D1279779	51.282	94.138	0.483
pilD	Acinetobacter nosocomialis M2	51.282	94.138	0.483
pilD	Vibrio campbellii strain DS40M4	49.645	97.241	0.483
pilD	Neisseria gonorrhoeae MS11	47.037	93.103	0.438