Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   BS636_RS06945 Genome accession   NZ_CP024011
Coordinates   1459989..1462124 (+) Length   711 a.a.
NCBI ID   WP_416202907.1    Uniprot ID   -
Organism   Acinetobacter sp. LoGeW2-3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1454989..1467124
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BS636_RS06925 (BS636_06925) pilM 1456940..1457998 (+) 1059 WP_099338121.1 pilus assembly protein PilM Machinery gene
  BS636_RS06930 (BS636_06930) pilN 1457998..1458639 (+) 642 WP_099338122.1 PilN domain-containing protein Machinery gene
  BS636_RS06935 (BS636_06935) comO 1458633..1459400 (+) 768 WP_171266066.1 type 4a pilus biogenesis protein PilO Machinery gene
  BS636_RS06940 (BS636_06940) pilP 1459400..1459927 (+) 528 WP_099338124.1 pilus assembly protein PilP Machinery gene
  BS636_RS06945 (BS636_06945) pilQ 1459989..1462124 (+) 2136 WP_416202907.1 type IV pilus secretin PilQ Machinery gene
  BS636_RS06950 (BS636_06950) aroK 1462161..1462697 (+) 537 WP_099338126.1 shikimate kinase AroK -
  BS636_RS06955 (BS636_06955) aroB 1462725..1463804 (+) 1080 WP_099338127.1 3-dehydroquinate synthase -
  BS636_RS06960 (BS636_06960) - 1463818..1464660 (+) 843 WP_099338128.1 hypothetical protein -

Sequence

Protein


Download         Length: 711 a.a.        Molecular weight: 77844.12 Da        Isoelectric Point: 5.1745

>NTDB_id=251143 BS636_RS06945 WP_416202907.1 1459989..1462124(+) (pilQ) [Acinetobacter sp. LoGeW2-3]
MNHVFRQFSMGAVAIAVMQAASAQVSMTNVVPMQIPGQGTEIRVMFNGLPPQPQAYQLESPSRLILDFDKAQQNLKQNNI
AVATKEASSVDVTSDAQRARLTVNLADAGAFTTRVEGNTFILKINPTNPVVPVQPIVQQNTQGITNIGFQRGAKGEGQVV
IDLASGNTPVDVQQQGTKVIVRALGSKISTHLTRRLNVNDFATPVSTVDAVNQNGSGVITIQTSDSYEYMAYQTDNKLTI
SLKRPEEKNPLKPKAAHHYTGKKISLDFQDIEVRRVLQLLADFTDINMVAADSVQGNITLRLKEVPWDQALDIVLKTKNL
DKRRNGNVIWIAPVSELIKAEEEEAKALKQSTKLAPIQTEYMQLSYAKAADIEKLITQNKSAQNSTNSSNTSSNNSNDED
KESLLSNRGSVSIDVRTNTLIVNDTQPFIDKIRNMVDLLDVQVKQVMVEARIVRASTEFTKEMGVKWGILSQGVTNNNHL
LVGGSDTTLWDLRTPELDEELGGWKYEIERPQNLNVDLGVANAAGKIAFGLISLSDFMLDLELSALQADGYGEVISTPKV
LTADKQKATVESGVEVPYQSTEGSGASATATTEFKDVVLKLDVTPSITPDGKVQMALDISSDSIAGTTPMGEYYLNKNRL
NTNVLVENGETVVLGGIFEQETLNGQTKVPFLGDIPYLGRLFRKDTKTDNKRELLIFVTPRIVNDSVSRNH

Nucleotide


Download         Length: 2136 bp        

>NTDB_id=251143 BS636_RS06945 WP_416202907.1 1459989..1462124(+) (pilQ) [Acinetobacter sp. LoGeW2-3]
ATGAATCATGTGTTTCGTCAGTTTTCAATGGGGGCAGTTGCCATCGCAGTTATGCAGGCGGCAAGTGCACAGGTTTCGAT
GACCAATGTGGTACCAATGCAAATTCCAGGGCAAGGGACTGAAATTCGCGTGATGTTTAATGGCTTGCCACCTCAGCCAC
AGGCTTATCAGTTAGAATCGCCCTCACGCCTGATTCTGGATTTTGATAAAGCTCAGCAAAATTTAAAACAAAATAATATT
GCTGTGGCAACAAAAGAAGCGAGTTCTGTAGATGTGACTTCAGATGCGCAGCGTGCACGTTTAACGGTGAATCTTGCAGA
TGCGGGTGCATTTACCACGCGTGTTGAAGGCAATACCTTTATTCTCAAGATTAACCCTACTAATCCTGTTGTCCCTGTAC
AGCCAATCGTGCAACAAAATACCCAAGGCATTACCAATATCGGGTTCCAGCGCGGGGCTAAAGGTGAAGGTCAGGTTGTG
ATTGATCTGGCGAGTGGTAATACACCAGTTGATGTTCAACAACAGGGAACTAAAGTTATTGTACGAGCTTTAGGTTCTAA
GATTTCGACACATCTGACTCGTCGTTTGAATGTTAATGACTTTGCTACGCCAGTCTCGACAGTAGATGCAGTGAACCAGA
ATGGTTCAGGCGTGATTACCATTCAAACTTCAGATAGCTATGAGTACATGGCTTATCAAACCGATAACAAACTGACAATT
AGCTTAAAACGTCCAGAAGAGAAAAATCCGCTAAAACCTAAAGCAGCACATCATTATACCGGCAAGAAAATTTCTTTGGA
TTTCCAAGATATTGAAGTACGTAGAGTATTGCAGTTACTAGCAGATTTTACTGATATTAATATGGTTGCGGCAGATAGCG
TACAAGGAAATATTACTTTACGCTTGAAAGAGGTACCTTGGGATCAGGCCTTAGATATCGTTCTAAAAACCAAGAATCTA
GATAAGCGCCGTAATGGAAATGTCATCTGGATTGCCCCTGTTTCTGAGCTAATTAAAGCTGAAGAAGAAGAAGCAAAAGC
TTTAAAACAAAGTACTAAATTAGCTCCAATCCAAACAGAATATATGCAACTCAGTTATGCAAAAGCTGCAGATATTGAAA
AACTGATTACACAAAATAAATCAGCCCAAAATTCTACTAACTCCTCTAATACTTCTTCCAATAATTCTAATGATGAAGAT
AAAGAGAGTTTATTGAGTAACCGAGGTTCAGTATCAATTGATGTGCGTACCAATACTCTGATTGTTAATGATACTCAACC
ATTTATTGATAAAATCCGTAATATGGTGGATTTGCTTGATGTACAGGTAAAACAGGTGATGGTTGAGGCCCGGATTGTTC
GAGCATCCACAGAGTTTACTAAAGAAATGGGTGTTAAATGGGGGATTTTATCTCAGGGTGTTACTAATAATAATCACCTG
TTAGTCGGTGGAAGTGATACAACCCTTTGGGATCTTAGAACGCCAGAGCTTGATGAGGAACTTGGTGGTTGGAAATATGA
AATTGAACGTCCGCAAAACTTAAACGTCGACCTAGGTGTAGCCAATGCGGCAGGTAAAATTGCCTTTGGTTTAATCAGCC
TTTCTGATTTTATGTTAGATCTAGAACTCTCTGCATTACAGGCAGATGGATATGGTGAGGTGATTTCTACGCCAAAAGTA
CTGACCGCAGATAAGCAAAAGGCAACAGTAGAATCGGGTGTCGAGGTTCCATATCAATCAACTGAGGGGAGTGGGGCAAG
TGCAACGGCGACTACGGAGTTTAAGGATGTGGTACTTAAACTTGATGTAACCCCAAGTATTACACCAGATGGTAAAGTGC
AAATGGCGTTAGATATTTCTAGTGACAGTATTGCTGGGACAACCCCAATGGGTGAGTATTACTTAAACAAAAATCGATTA
AATACGAATGTACTTGTTGAAAATGGCGAGACTGTAGTGCTCGGTGGGATTTTTGAGCAAGAGACACTGAATGGTCAAAC
TAAAGTACCATTCTTAGGTGATATTCCATATTTAGGCCGTTTGTTCCGTAAGGATACAAAAACTGACAATAAACGTGAGC
TCCTGATTTTTGTTACACCTCGAATTGTTAATGACAGTGTTTCAAGAAATCATTAA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(545-703)

Secretin and TonB N terminus short domain (STN)

(291-333)

AMIN domain (AMIN)

(40-120)

Bacterial type II/III secretion system short domain (Secretin_N)

(361-445)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

74.064

100

0.751
  pilQ Acinetobacter baumannii strain A118

73.925

100

0.75
  comQ Acinetobacter baylyi ADP1

69.456

100

0.7
  pilQ Pseudomonas aeruginosa PAK

40.909

99.015

0.405
  pilQ Legionella pneumophila strain Lp02

36.517

100

0.366
  pilQ Legionella pneumophila strain ERS1305867

36.402

99.297

0.361
  pilQ Neisseria gonorrhoeae strain FA1090

34.548

100

0.36

Multiple sequence alignment