Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   BS636_RS06935 Genome accession   NZ_CP024011
Coordinates   1458633..1459400 (+) Length   255 a.a.
NCBI ID   WP_171266066.1    Uniprot ID   -
Organism   Acinetobacter sp. LoGeW2-3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1453633..1464400
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BS636_RS06920 (BS636_06920) ponA 1454245..1456770 (-) 2526 WP_099338120.1 penicillin-binding protein PBP1a -
  BS636_RS06925 (BS636_06925) pilM 1456940..1457998 (+) 1059 WP_099338121.1 pilus assembly protein PilM Machinery gene
  BS636_RS06930 (BS636_06930) pilN 1457998..1458639 (+) 642 WP_099338122.1 PilN domain-containing protein Machinery gene
  BS636_RS06935 (BS636_06935) comO 1458633..1459400 (+) 768 WP_171266066.1 type 4a pilus biogenesis protein PilO Machinery gene
  BS636_RS06940 (BS636_06940) pilP 1459400..1459927 (+) 528 WP_099338124.1 pilus assembly protein PilP Machinery gene
  BS636_RS06945 (BS636_06945) pilQ 1459989..1462124 (+) 2136 WP_416202907.1 type IV pilus secretin PilQ Machinery gene
  BS636_RS06950 (BS636_06950) aroK 1462161..1462697 (+) 537 WP_099338126.1 shikimate kinase AroK -
  BS636_RS06955 (BS636_06955) aroB 1462725..1463804 (+) 1080 WP_099338127.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29046.03 Da        Isoelectric Point: 5.9144

>NTDB_id=251141 BS636_RS06935 WP_171266066.1 1458633..1459400(+) (comO) [Acinetobacter sp. LoGeW2-3]
MMNEQFDELGQEAVVAPKNKMTVEKFFQQFNTLDPNNYGSWPLAVKITCWIFIVFLVLMLAYFGLIRGKIESITQANAQE
QNLLNEFREKDSKLRNLQQYQQQLQDMEASFNQQLEQLPKETEIPGLVEDINLSGVNAGLKFKNIRLEPEVKQEFFIEQP
ISIEATGDYHAFGSFVSGIAGLSRIVTLHDFTITGTENKEKKTDIPVIDYTLKAKTYRYVGAQDRSQMDQQSDVDKSGDK
KNSKKVSKAKNGGKK

Nucleotide


Download         Length: 768 bp        

>NTDB_id=251141 BS636_RS06935 WP_171266066.1 1458633..1459400(+) (comO) [Acinetobacter sp. LoGeW2-3]
ATCATGAACGAACAATTCGATGAATTAGGTCAGGAAGCTGTTGTTGCACCGAAAAATAAAATGACGGTAGAAAAATTCTT
TCAACAGTTTAATACCTTGGATCCAAATAACTACGGTAGTTGGCCACTGGCTGTAAAGATTACCTGCTGGATCTTTATTG
TGTTCCTGGTTTTAATGCTGGCTTACTTTGGTTTGATTCGAGGAAAAATTGAATCGATTACTCAAGCCAATGCTCAAGAA
CAGAATCTGTTAAATGAATTTCGTGAGAAAGATTCCAAGTTGCGTAATTTGCAACAGTACCAACAACAACTTCAGGATAT
GGAAGCAAGCTTTAACCAACAGCTTGAACAGTTGCCGAAGGAAACTGAAATTCCGGGTCTGGTTGAAGATATTAACTTGA
GTGGTGTCAATGCAGGACTGAAGTTCAAGAATATTCGTCTTGAACCTGAGGTGAAGCAAGAGTTCTTTATTGAACAGCCC
ATCTCTATTGAAGCAACCGGTGATTATCATGCCTTTGGTTCATTTGTCAGCGGGATTGCGGGATTGTCTCGTATTGTGAC
GCTACACGACTTTACAATTACGGGTACTGAAAATAAAGAGAAGAAAACAGATATTCCAGTTATTGATTACACCTTGAAGG
CGAAAACCTATCGTTATGTGGGAGCTCAAGACAGATCTCAGATGGATCAACAATCTGATGTAGATAAAAGCGGTGATAAG
AAAAATAGTAAAAAAGTAAGTAAAGCTAAAAATGGAGGGAAAAAGTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Acinetobacter baylyi ADP1

65.873

98.824

0.651
  pilO Acinetobacter baumannii D1279779

70.485

89.02

0.627

Multiple sequence alignment