Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   BS636_RS06720 Genome accession   NZ_CP024011
Coordinates   1413945..1415177 (-) Length   410 a.a.
NCBI ID   WP_099338088.1    Uniprot ID   A0A2D1INZ9
Organism   Acinetobacter sp. LoGeW2-3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1408945..1420177
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BS636_RS06695 (BS636_06695) - 1410291..1410614 (+) 324 WP_099338083.1 pyrimidine/purine nucleoside phosphorylase -
  BS636_RS06700 (BS636_06700) rlmB 1410768..1411517 (+) 750 WP_099338084.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  BS636_RS06705 (BS636_06705) - 1411524..1412447 (+) 924 WP_099338085.1 DMT family transporter -
  BS636_RS06710 (BS636_06710) coaE 1412460..1413062 (-) 603 WP_099338086.1 dephospho-CoA kinase -
  BS636_RS16555 (BS636_06715) pilD 1413064..1413927 (-) 864 WP_099338087.1 prepilin peptidase Machinery gene
  BS636_RS06720 (BS636_06720) pilC 1413945..1415177 (-) 1233 WP_099338088.1 type II secretion system F family protein Machinery gene
  BS636_RS06725 (BS636_06725) pilB 1415207..1416916 (-) 1710 WP_099338089.1 type IV-A pilus assembly ATPase PilB Machinery gene
  BS636_RS06730 (BS636_06730) tpiA 1417199..1417990 (+) 792 WP_099338090.1 triose-phosphate isomerase -
  BS636_RS06735 (BS636_06735) secG 1418004..1418333 (+) 330 WP_099338091.1 preprotein translocase subunit SecG -
  BS636_RS06765 (BS636_06765) rimP 1419496..1420020 (+) 525 WP_099338092.1 ribosome maturation factor RimP -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 45113.53 Da        Isoelectric Point: 9.8808

>NTDB_id=251137 BS636_RS06720 WP_099338088.1 1413945..1415177(-) (pilC) [Acinetobacter sp. LoGeW2-3]
MASVKKGQMMPTFTYEGVDRKGVKIKGEMPARNLALAKVTLRKQGISIKSIREKKKNILEGLMKKKVTTLDITIFTRQLA
TMMKAGVPLVQGFEIVAEGLENPSMREVVLGIKGEVEGGNTFAGALRKYPQYFDKLFCSLVESGEQSGALETMLDRVAIY
KEKSELLKQKIKKAMKYPATVLVVAAIVTIILMVKVVPVFQELFQGFGADLPAFTQMVVNMSNWFQQYWFLLIIFIGIAI
TAFLEAKKRSKKFRDLLDKAALKAPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVVYEEAVMKIREDV
ATGQQLQFAMRVTNKFPSMAVQMVSIGEESGALDAMLDKVATHYENEVDNAVDGLTSMMEPLIMAILGVLVGGLVIAMYL
PIFQMGSVVG

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=251137 BS636_RS06720 WP_099338088.1 1413945..1415177(-) (pilC) [Acinetobacter sp. LoGeW2-3]
ATGGCTTCAGTGAAAAAAGGTCAAATGATGCCGACCTTCACCTATGAAGGGGTAGACCGTAAAGGTGTAAAAATTAAAGG
GGAAATGCCTGCACGTAACCTCGCCTTGGCTAAGGTCACGTTGCGTAAACAGGGCATCAGCATCAAGAGTATTCGAGAGA
AAAAGAAGAATATTCTTGAAGGTCTGATGAAGAAAAAAGTGACCACACTGGATATCACTATTTTCACCCGTCAACTCGCA
ACCATGATGAAAGCCGGCGTACCCTTAGTGCAAGGCTTTGAAATCGTCGCAGAAGGTCTTGAAAATCCATCTATGCGAGA
AGTTGTACTCGGCATTAAAGGTGAGGTTGAGGGCGGAAATACCTTTGCTGGGGCGCTGCGTAAATACCCTCAGTACTTCG
ATAAGCTATTTTGTTCTTTGGTTGAATCGGGTGAGCAATCCGGTGCTTTAGAAACCATGCTGGATCGTGTCGCGATCTAT
AAAGAAAAAAGTGAGCTGTTAAAGCAGAAAATTAAAAAAGCCATGAAATATCCAGCAACTGTCCTTGTAGTGGCAGCCAT
CGTTACGATCATTTTGATGGTAAAAGTAGTCCCAGTATTCCAAGAACTTTTCCAAGGCTTTGGCGCTGATCTACCTGCTT
TTACTCAGATGGTTGTAAATATGTCTAACTGGTTCCAGCAGTACTGGTTCCTATTAATTATCTTTATAGGTATTGCTATT
ACAGCTTTTCTGGAAGCAAAAAAACGCAGTAAAAAATTCCGTGACCTACTCGATAAAGCTGCACTGAAAGCTCCTATCTT
TGGTGACTTAGTCTATAAAGCGATTATCGCCCGTTACAGCCGTACGCTCGCAACAACCTTTGCAGCCGGTGTACCTTTAA
TTGATGCACTGGAATCTACTGCCGGTGCAACCAATAACGTGGTCTATGAAGAAGCAGTGATGAAAATCCGTGAAGATGTT
GCTACTGGTCAACAGCTTCAATTTGCCATGCGTGTCACCAACAAATTTCCATCTATGGCTGTGCAAATGGTGTCTATTGG
TGAAGAATCTGGTGCACTTGATGCCATGCTGGATAAAGTCGCGACCCATTATGAAAATGAAGTTGATAATGCTGTTGATG
GTCTGACTTCCATGATGGAACCATTGATTATGGCTATTCTTGGTGTTCTAGTAGGTGGTCTTGTGATTGCGATGTACCTA
CCAATCTTCCAGATGGGTTCAGTGGTTGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(75-198)

Type II secretion system (T2SS), protein F (T2SSF)

(280-401)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2D1INZ9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

88.943

99.268

0.883
  pilC Acinetobacter baylyi ADP1

82.31

99.268

0.817
  pilC Pseudomonas stutzeri DSM 10701

61.558

97.073

0.598
  pilC Legionella pneumophila strain ERS1305867

53.518

97.073

0.52
  pilG Neisseria gonorrhoeae MS11

48.241

97.073

0.468
  pilG Neisseria meningitidis 44/76-A

48.241

97.073

0.468
  pilC Vibrio cholerae strain A1552

43.521

99.756

0.434
  pilC Vibrio campbellii strain DS40M4

42.469

98.78

0.42

Multiple sequence alignment