Detailed information
Bioinformatically predicted
Overview
| Name | comGC | Type | Machinery gene |
| Locus tag | CRN64_RS01280 | Genome accession | NZ_CP023970 |
| Coordinates | 256903..257217 (+) | Length | 104 a.a. |
| NCBI ID | WP_002459016.1 | Uniprot ID | - |
| Organism | Staphylococcus lugdunensis strain FDAARGOS_381 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 251903..262217
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CRN64_RS01250 (CRN64_01250) | - | 252695..252898 (+) | 204 | WP_002459010.1 | YqgQ family protein | - |
| CRN64_RS01255 (CRN64_01255) | - | 252895..253881 (+) | 987 | WP_002491907.1 | ROK family glucokinase | - |
| CRN64_RS01260 (CRN64_01260) | - | 253881..254204 (+) | 324 | WP_002459012.1 | MTH1187 family thiamine-binding protein | - |
| CRN64_RS01265 (CRN64_01265) | - | 254208..254831 (+) | 624 | WP_002459013.1 | MBL fold metallo-hydrolase | - |
| CRN64_RS01270 (CRN64_01270) | comGA | 254878..255852 (+) | 975 | WP_002491905.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| CRN64_RS01275 (CRN64_01275) | comGB | 255824..256888 (+) | 1065 | WP_002478130.1 | competence type IV pilus assembly protein ComGB | - |
| CRN64_RS01280 (CRN64_01280) | comGC | 256903..257217 (+) | 315 | WP_002459016.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| CRN64_RS01285 (CRN64_01285) | comGD | 257150..257644 (+) | 495 | WP_225306455.1 | competence type IV pilus minor pilin ComGD | - |
| CRN64_RS01290 (CRN64_01290) | - | 257631..257924 (+) | 294 | WP_002459018.1 | hypothetical protein | - |
| CRN64_RS01295 (CRN64_01295) | - | 257986..258345 (+) | 360 | WP_002459019.1 | competence type IV pilus minor pilin ComGF | - |
| CRN64_RS01305 (CRN64_01305) | - | 258499..259017 (+) | 519 | WP_002459021.1 | shikimate kinase | - |
| CRN64_RS01310 (CRN64_01310) | gcvT | 259187..260278 (+) | 1092 | WP_037540763.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| CRN64_RS01315 (CRN64_01315) | gcvPA | 260295..261644 (+) | 1350 | WP_002478134.1 | aminomethyl-transferring glycine dehydrogenase subunit GcvPA | - |
Sequence
Protein
Download Length: 104 a.a. Molecular weight: 11373.37 Da Isoelectric Point: 8.2727
>NTDB_id=251031 CRN64_RS01280 WP_002459016.1 256903..257217(+) (comGC) [Staphylococcus lugdunensis strain FDAARGOS_381]
MKFSFYKKCKAFTLIEMLLVLLIISVLLILIIPNIAKQTAHVQSTGCEAQVKMVNSQIEAYTLKHNGSPKSIDDLISEGF
IKDGQKNCKSGETISISNGEAVAN
MKFSFYKKCKAFTLIEMLLVLLIISVLLILIIPNIAKQTAHVQSTGCEAQVKMVNSQIEAYTLKHNGSPKSIDDLISEGF
IKDGQKNCKSGETISISNGEAVAN
Nucleotide
Download Length: 315 bp
>NTDB_id=251031 CRN64_RS01280 WP_002459016.1 256903..257217(+) (comGC) [Staphylococcus lugdunensis strain FDAARGOS_381]
ATGAAATTTTCTTTTTATAAAAAATGCAAAGCGTTTACACTAATAGAAATGTTATTAGTATTACTAATTATTAGTGTCTT
GCTTATCTTAATTATTCCAAACATTGCCAAACAAACAGCACATGTACAATCAACAGGTTGTGAAGCACAAGTAAAGATGG
TCAATAGCCAAATAGAAGCCTATACTCTAAAGCATAATGGATCTCCAAAAAGCATTGATGATTTAATTTCTGAGGGTTTT
ATTAAAGATGGTCAAAAGAATTGCAAATCTGGGGAAACCATCAGCATATCAAATGGTGAGGCAGTTGCAAATTAA
ATGAAATTTTCTTTTTATAAAAAATGCAAAGCGTTTACACTAATAGAAATGTTATTAGTATTACTAATTATTAGTGTCTT
GCTTATCTTAATTATTCCAAACATTGCCAAACAAACAGCACATGTACAATCAACAGGTTGTGAAGCACAAGTAAAGATGG
TCAATAGCCAAATAGAAGCCTATACTCTAAAGCATAATGGATCTCCAAAAAGCATTGATGATTTAATTTCTGAGGGTTTT
ATTAAAGATGGTCAAAAGAATTGCAAATCTGGGGAAACCATCAGCATATCAAATGGTGAGGCAGTTGCAAATTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGC | Staphylococcus aureus MW2 |
82.353 |
98.077 |
0.808 |
| comGC | Staphylococcus aureus N315 |
82.353 |
98.077 |
0.808 |
| comYC | Streptococcus gordonii str. Challis substr. CH1 |
45.918 |
94.231 |
0.433 |
| comGC/cglC | Streptococcus pneumoniae TIGR4 |
44.554 |
97.115 |
0.433 |
| comGC | Bacillus subtilis subsp. subtilis str. 168 |
46.154 |
87.5 |
0.404 |
| comGC/cglC | Streptococcus pneumoniae R6 |
48.235 |
81.731 |
0.394 |
| comGC/cglC | Streptococcus pneumoniae Rx1 |
48.235 |
81.731 |
0.394 |
| comGC/cglC | Streptococcus pneumoniae D39 |
48.235 |
81.731 |
0.394 |
| comGC | Lactococcus lactis subsp. cremoris KW2 |
50.633 |
75.962 |
0.385 |
| comGC/cglC | Streptococcus mitis SK321 |
51.282 |
75 |
0.385 |
| comGC/cglC | Streptococcus mitis NCTC 12261 |
51.282 |
75 |
0.385 |
| comYC | Streptococcus mutans UA140 |
48.75 |
76.923 |
0.375 |
| comYC | Streptococcus mutans UA159 |
48.75 |
76.923 |
0.375 |