Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   CPC19_RS11170 Genome accession   NZ_CP023664
Coordinates   2300904..2302124 (+) Length   406 a.a.
NCBI ID   WP_015005194.1    Uniprot ID   S5TZX8
Organism   Cycloclasticus sp. PY97N     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2295904..2307124
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CPC19_RS11150 (CPC19_11150) - 2296146..2297246 (-) 1101 WP_016390926.1 DegT/DnrJ/EryC1/StrS aminotransferase family protein -
  CPC19_RS11155 (CPC19_11155) - 2297243..2297830 (-) 588 WP_016390927.1 acyltransferase -
  CPC19_RS11160 (CPC19_11160) - 2297838..2298893 (-) 1056 WP_016390928.1 Gfo/Idh/MocA family protein -
  CPC19_RS11165 (CPC19_11165) pilB 2299189..2300898 (+) 1710 WP_016390929.1 type IV-A pilus assembly ATPase PilB Machinery gene
  CPC19_RS11170 (CPC19_11170) pilC 2300904..2302124 (+) 1221 WP_015005194.1 type II secretion system F family protein Machinery gene
  CPC19_RS11175 (CPC19_11175) pilD 2302154..2303029 (+) 876 WP_016390930.1 A24 family peptidase Machinery gene
  CPC19_RS11180 (CPC19_11180) coaE 2303036..2303641 (+) 606 WP_096910803.1 dephospho-CoA kinase -
  CPC19_RS11185 (CPC19_11185) zapD 2303682..2304449 (+) 768 WP_020933068.1 cell division protein ZapD -
  CPC19_RS11190 (CPC19_11190) yacG 2304451..2304639 (+) 189 WP_016390933.1 DNA gyrase inhibitor YacG -
  CPC19_RS11195 (CPC19_11195) - 2304663..2305598 (-) 936 WP_016390934.1 Nudix family hydrolase -
  CPC19_RS11200 (CPC19_11200) argJ 2305626..2306846 (-) 1221 WP_016390935.1 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 44340.29 Da        Isoelectric Point: 7.3558

>NTDB_id=248996 CPC19_RS11170 WP_015005194.1 2300904..2302124(+) (pilC) [Cycloclasticus sp. PY97N]
MASSASKITYIWEGTDNKGNRSKGEINARSDALVKAELRRQGIRPLKVKKKPQALFGSMGQKPIVPKDIAVFSRQLATMM
ASGIPLVQSFDIIGKGHEKPAMQDMLANIKSDIEGGSTLAESLGKYPFQFDELFCNLVEAGEHAGILEDLLVKIAEYKEK
TESLKAKIKKALTYPISVLVVAVVVTAILLIFVVPQFESLFSGFGADLPAFTQMVVELSRFMQEWWWAVFGIIGGVVFVL
MQVKKRSRKFNHLLDRMILKMPIIGDIMNKAAIARYARTLSTMSAAGVPLVEALESVSGATGNIVYSEAVLQMREQVATG
IQLQQAMKNVGLFPHMVVQMVAIGEEAGSVESMLGKVADFYEEEVDNAVDSLSSLIEPLIMAILGILVGGLIVAMYLPIF
MLGSVF

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=248996 CPC19_RS11170 WP_015005194.1 2300904..2302124(+) (pilC) [Cycloclasticus sp. PY97N]
ATGGCATCTAGTGCATCAAAAATTACCTATATTTGGGAAGGAACCGACAATAAAGGCAACCGCAGCAAAGGGGAAATAAA
TGCCCGAAGTGATGCCCTTGTTAAAGCAGAACTGAGGCGTCAAGGGATTCGCCCTCTTAAGGTTAAGAAAAAGCCTCAAG
CACTTTTTGGTAGCATGGGTCAAAAACCAATTGTTCCTAAAGATATCGCGGTTTTCAGCCGTCAATTAGCAACCATGATG
GCGTCCGGCATTCCATTAGTACAATCTTTTGATATTATTGGCAAAGGACACGAAAAGCCTGCCATGCAAGACATGCTTGC
CAACATTAAATCAGACATTGAGGGTGGGTCAACACTCGCTGAAAGTTTAGGAAAATACCCTTTTCAATTCGATGAGCTAT
TTTGTAATTTAGTAGAAGCTGGCGAACATGCCGGTATTCTCGAAGATTTACTAGTCAAAATTGCTGAATATAAAGAAAAA
ACAGAAAGCTTAAAAGCTAAAATCAAAAAAGCCCTTACCTATCCTATTTCAGTATTAGTAGTGGCCGTTGTTGTTACCGC
AATCTTATTGATTTTTGTGGTGCCTCAGTTTGAAAGCTTATTTAGCGGCTTTGGTGCAGATTTACCTGCGTTTACACAAA
TGGTCGTCGAACTGTCTCGTTTTATGCAAGAGTGGTGGTGGGCTGTCTTTGGCATAATAGGCGGTGTTGTATTTGTTCTA
ATGCAAGTTAAAAAACGTTCACGTAAATTTAACCACCTGCTCGATAGAATGATACTGAAAATGCCAATTATTGGCGACAT
CATGAACAAAGCAGCCATTGCTCGTTATGCTAGAACGTTGTCCACCATGTCTGCTGCTGGCGTACCCTTAGTAGAAGCAC
TAGAGTCTGTTTCAGGGGCAACCGGAAACATTGTTTACTCTGAAGCCGTTTTACAAATGAGAGAACAAGTGGCGACCGGC
ATCCAATTACAACAAGCCATGAAAAATGTAGGTCTTTTCCCTCATATGGTTGTACAAATGGTCGCTATTGGCGAAGAAGC
AGGCTCGGTCGAAAGCATGCTTGGTAAAGTGGCTGATTTTTATGAAGAAGAGGTCGACAACGCTGTGGATTCCTTATCTA
GCCTTATTGAACCCTTAATTATGGCTATTCTCGGTATCTTAGTGGGTGGTTTAATTGTTGCCATGTACCTGCCTATCTTT
ATGTTAGGGTCTGTTTTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)

Type II secretion system (T2SS), protein F (T2SSF)

(277-398)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB S5TZX8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

60.945

99.015

0.603
  pilC Pseudomonas stutzeri DSM 10701

56.158

100

0.562
  pilC Acinetobacter baumannii D1279779

56.171

97.783

0.549
  pilC Acinetobacter baylyi ADP1

54.054

100

0.542
  pilG Neisseria meningitidis 44/76-A

43.829

97.783

0.429
  pilG Neisseria gonorrhoeae MS11

43.577

97.783

0.426
  pilC Vibrio cholerae strain A1552

41.709

98.03

0.409
  pilC Vibrio campbellii strain DS40M4

40.05

99.015

0.397

Multiple sequence alignment