Detailed information NTG0248997

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: CPC19_RS11175
• Genome accession: NZ_CP023664
• Coordinates: 2302154..2303029 (+)
• Length: 291 a.a.
• NCBI ID: WP_016390930.1
• Uniprot ID: A0AB33YZM5
• Organism: Cycloclasticus sp. PY97N
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2297154..2308029

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CPC19_RS11155 (CPC19_11155)	-	2297243..2297830 (-)	588	WP_016390927.1	acyltransferase	-
CPC19_RS11160 (CPC19_11160)	-	2297838..2298893 (-)	1056	WP_016390928.1	Gfo/Idh/MocA family protein	-
CPC19_RS11165 (CPC19_11165)	pilB	2299189..2300898 (+)	1710	WP_016390929.1	type IV-A pilus assembly ATPase PilB	Machinery gene
CPC19_RS11170 (CPC19_11170)	pilC	2300904..2302124 (+)	1221	WP_015005194.1	type II secretion system F family protein	Machinery gene
CPC19_RS11175 (CPC19_11175)	pilD	2302154..2303029 (+)	876	WP_016390930.1	A24 family peptidase	Machinery gene
CPC19_RS11180 (CPC19_11180)	coaE	2303036..2303641 (+)	606	WP_096910803.1	dephospho-CoA kinase	-
CPC19_RS11185 (CPC19_11185)	zapD	2303682..2304449 (+)	768	WP_020933068.1	cell division protein ZapD	-
CPC19_RS11190 (CPC19_11190)	yacG	2304451..2304639 (+)	189	WP_016390933.1	DNA gyrase inhibitor YacG	-
CPC19_RS11195 (CPC19_11195)	-	2304663..2305598 (-)	936	WP_016390934.1	Nudix family hydrolase	-
CPC19_RS11200 (CPC19_11200)	argJ	2305626..2306846 (-)	1221	WP_016390935.1	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	-

Sequence

Protein

• Length: 291 a.a.
• Molecular weight: 32138.56 Da
• Isoelectric Point: 7.0020

>NTDB_id=248997 CPC19_RS11175 WP_016390930.1 2302154..2303029(+) (pilD) [Cycloclasticus sp. PY97N]
MSIIQALEQSPFLFYLTVCLLGLLVGSFLNVVAYRLPIMLQNAWRQECLAFLEQEDTNNPSPAAFNLSQPRSRCPSCQHP
ISALENIPVLSYLFLQGRCKNCQQAISIRYPAVELITALLSLLIAVQFGVSLQMCVALLFTWALICLTLIDLDTQLLPDS
ITLPLLWFALSISLFEIFITPKTALIGALAGYLSLWSVFWLFKLITGKEGMGYGDFKLLAAIGALLGWKMLPLVIMLSAL
AGAIIGITLIIIHGRDKNIPIPFGPYLSIAAFIALIWGEKINLTYLQFVGL

Nucleotide

• Length: 876 bp

>NTDB_id=248997 CPC19_RS11175 WP_016390930.1 2302154..2303029(+) (pilD) [Cycloclasticus sp. PY97N]
ATGAGCATTATCCAAGCGCTTGAACAAAGCCCCTTTTTATTCTATTTAACCGTTTGCTTACTAGGACTTCTGGTTGGTAG
CTTTCTTAATGTTGTCGCCTATCGGCTACCCATCATGTTACAAAATGCTTGGCGCCAAGAATGCCTCGCCTTTCTTGAGC
AAGAAGATACAAATAATCCTTCACCAGCGGCCTTTAATTTATCGCAACCGCGTTCACGCTGCCCTTCTTGCCAACACCCT
ATTAGCGCACTCGAAAACATTCCCGTTTTGAGCTACTTATTTCTACAAGGGCGATGTAAAAACTGCCAACAAGCTATCTC
AATTAGATACCCCGCCGTCGAGTTAATCACTGCTCTTTTGTCGCTTCTCATTGCCGTACAGTTTGGCGTGTCGTTACAAA
TGTGCGTCGCTTTATTATTTACCTGGGCGTTAATCTGCCTAACATTGATAGACCTTGACACTCAACTATTGCCCGACTCT
ATCACCCTTCCACTTTTATGGTTTGCCTTATCCATCAGCCTATTTGAAATTTTCATAACACCTAAAACCGCACTCATCGG
CGCACTTGCCGGTTACCTTAGCCTTTGGTCAGTTTTTTGGTTATTTAAATTAATCACCGGTAAAGAAGGGATGGGCTACG
GTGACTTTAAGCTACTTGCCGCTATTGGCGCTTTATTGGGCTGGAAAATGTTACCTCTGGTCATTATGTTATCTGCTTTA
GCTGGTGCAATCATTGGAATAACACTCATCATTATTCACGGACGAGATAAGAACATACCCATACCATTTGGCCCCTATTT
ATCTATTGCCGCGTTTATTGCGTTGATCTGGGGCGAAAAAATTAACCTAACTTACCTCCAGTTTGTCGGCTTATAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-128)

• Type IV leader peptidase family (Peptidase_A24) (139-247)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	51.228	97.938	0.502
pilD	Acinetobacter nosocomialis M2	50.877	97.938	0.498
pilD	Vibrio cholerae strain A1552	50	96.907	0.485
pilD	Vibrio campbellii strain DS40M4	48.387	95.876	0.464
pilD	Neisseria gonorrhoeae MS11	47.727	90.722	0.433