Detailed information
Bioinformatically predicted
Overview
| Name | comE | Type | Machinery gene |
| Locus tag | CN538_RS19190 | Genome accession | NZ_CP023559 |
| Coordinates | 4181119..4181376 (+) | Length | 85 a.a. |
| NCBI ID | WP_106420458.1 | Uniprot ID | - |
| Organism | Salinicola tamaricis strain F01 | ||
| Function | DNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 4176119..4186376
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CN538_RS19160 | - | 4176887..4177123 (+) | 237 | WP_106420455.1 | DUF883 family protein | - |
| CN538_RS20085 | - | 4177250..4177678 (-) | 429 | WP_164999670.1 | hypothetical protein | - |
| CN538_RS19165 | - | 4177638..4177865 (-) | 228 | WP_232825242.1 | succinate dehydrogenase assembly factor 2 | - |
| CN538_RS19170 | - | 4178217..4178570 (+) | 354 | WP_277985053.1 | integration host factor subunit beta | - |
| CN538_RS19175 | - | 4178650..4178955 (+) | 306 | WP_035473692.1 | LapA family protein | - |
| CN538_RS19180 | lapB | 4178957..4180144 (+) | 1188 | WP_106420457.1 | lipopolysaccharide assembly protein LapB | - |
| CN538_RS19185 | pyrF | 4180145..4180849 (-) | 705 | WP_106420721.1 | orotidine-5'-phosphate decarboxylase | - |
| CN538_RS19190 | comE | 4181119..4181376 (+) | 258 | WP_106420458.1 | ComEA family DNA-binding protein | Machinery gene |
| CN538_RS19195 | - | 4181648..4182163 (+) | 516 | WP_106420459.1 | FxsA family protein | - |
| CN538_RS19200 | - | 4182373..4182666 (+) | 294 | WP_035473701.1 | co-chaperone GroES | - |
| CN538_RS19205 | groL | 4182728..4184371 (+) | 1644 | WP_106420460.1 | chaperonin GroEL | - |
| CN538_RS19210 | - | 4184515..4185234 (+) | 720 | WP_106420461.1 | RNA methyltransferase | - |
| CN538_RS19215 | - | 4185308..4185703 (+) | 396 | WP_106420462.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 85 a.a. Molecular weight: 8912.27 Da Isoelectric Point: 4.4472
>NTDB_id=248395 CN538_RS19190 WP_106420458.1 4181119..4181376(+) (comE) [Salinicola tamaricis strain F01]
MKKLFGIALLSLFMAASLPAVADPVNINQADAQTLATLPGIGEVKAQAIVEDRKANGQYESLDELTRVSGIGEATIAKLK
DDATL
MKKLFGIALLSLFMAASLPAVADPVNINQADAQTLATLPGIGEVKAQAIVEDRKANGQYESLDELTRVSGIGEATIAKLK
DDATL
Nucleotide
Download Length: 258 bp
>NTDB_id=248395 CN538_RS19190 WP_106420458.1 4181119..4181376(+) (comE) [Salinicola tamaricis strain F01]
ATGAAAAAGCTGTTCGGTATCGCCCTGCTGTCGCTGTTCATGGCCGCCAGCCTACCCGCCGTCGCCGACCCGGTGAACAT
CAACCAGGCCGATGCCCAGACTCTGGCAACGCTACCGGGGATCGGCGAGGTCAAGGCGCAGGCGATCGTCGAAGACCGCA
AGGCCAACGGCCAGTACGAGTCGCTCGACGAGCTCACCCGCGTCAGCGGCATCGGCGAGGCCACCATCGCCAAGCTCAAG
GACGACGCCACCCTCTGA
ATGAAAAAGCTGTTCGGTATCGCCCTGCTGTCGCTGTTCATGGCCGCCAGCCTACCCGCCGTCGCCGACCCGGTGAACAT
CAACCAGGCCGATGCCCAGACTCTGGCAACGCTACCGGGGATCGGCGAGGTCAAGGCGCAGGCGATCGTCGAAGACCGCA
AGGCCAACGGCCAGTACGAGTCGCTCGACGAGCTCACCCGCGTCAGCGGCATCGGCGAGGCCACCATCGCCAAGCTCAAG
GACGACGCCACCCTCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comE | Neisseria gonorrhoeae MS11 |
49.412 |
100 |
0.494 |
| comE | Neisseria gonorrhoeae MS11 |
49.412 |
100 |
0.494 |
| comE | Neisseria gonorrhoeae MS11 |
49.412 |
100 |
0.494 |
| comE | Neisseria gonorrhoeae MS11 |
49.412 |
100 |
0.494 |
| Cj0011c | Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 |
44.156 |
90.588 |
0.4 |
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
49.275 |
81.176 |
0.4 |
| comEA | Vibrio cholerae strain A1552 |
62.264 |
62.353 |
0.388 |
| comEA | Vibrio cholerae C6706 |
62.264 |
62.353 |
0.388 |
| comEA | Vibrio campbellii strain DS40M4 |
55.172 |
68.235 |
0.376 |
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
55.172 |
68.235 |
0.376 |