Detailed information
Bioinformatically predicted
Overview
| Name | pilU | Type | Machinery gene |
| Locus tag | PFL01_RS15495 | Genome accession | NC_007492 |
| Coordinates | 3530653..3531765 (-) | Length | 370 a.a. |
| NCBI ID | WP_011334475.1 | Uniprot ID | Q3KBN4 |
| Organism | Pseudomonas fluorescens Pf0-1 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3525653..3536765
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PFL01_RS15490 (Pfl01_3081) | - | 3526721..3530524 (-) | 3804 | WP_011334474.1 | hypothetical protein | - |
| PFL01_RS15495 (Pfl01_3082) | pilU | 3530653..3531765 (-) | 1113 | WP_011334475.1 | PilT/PilU family type 4a pilus ATPase | Machinery gene |
| PFL01_RS15500 (Pfl01_3083) | - | 3531893..3534430 (+) | 2538 | WP_011334476.1 | PAS domain-containing hybrid sensor histidine kinase/response regulator | - |
| PFL01_RS15505 (Pfl01_3084) | - | 3534480..3534755 (+) | 276 | WP_007952044.1 | peptidylprolyl isomerase | - |
| PFL01_RS15510 (Pfl01_3085) | - | 3534805..3535740 (-) | 936 | WP_011334477.1 | sugar kinase | - |
Sequence
Protein
Download Length: 370 a.a. Molecular weight: 41300.37 Da Isoelectric Point: 7.4054
>NTDB_id=24834 PFL01_RS15495 WP_011334475.1 3530653..3531765(-) (pilU) [Pseudomonas fluorescens Pf0-1]
MEIDALLKQLASRHGSDLFLSTGAPPSARFDGVLTPLNDQPFKPGEVATVATSLMDAEQRREFDRDLEMNLAISRTGIGR
FRVNIFKQRNDVSIVIRNVKLDIPRFEDLKLPAVLLETVMLKQGLILFVGATDSGKSTSLAALIDHRNRHSSGHIITIED
PVEYIHRHKKSIINQREVGVDTRSFHAALKNTLRQAPDVVLIGEIRDRETMEHALAFAETGHLVLSTLHANNANQALDRI
INFFPEERRPQLLHSLGNHLKAFVSQRLVRTLDGQRRAAVEVMLGSPTIADLIRRNELGELKVIMEKSTELGMQTFDDAL
YKLVAEGVLSVQEALKHADSINNLKLKLKLKLERQGETPTSSSGEWGLAD
MEIDALLKQLASRHGSDLFLSTGAPPSARFDGVLTPLNDQPFKPGEVATVATSLMDAEQRREFDRDLEMNLAISRTGIGR
FRVNIFKQRNDVSIVIRNVKLDIPRFEDLKLPAVLLETVMLKQGLILFVGATDSGKSTSLAALIDHRNRHSSGHIITIED
PVEYIHRHKKSIINQREVGVDTRSFHAALKNTLRQAPDVVLIGEIRDRETMEHALAFAETGHLVLSTLHANNANQALDRI
INFFPEERRPQLLHSLGNHLKAFVSQRLVRTLDGQRRAAVEVMLGSPTIADLIRRNELGELKVIMEKSTELGMQTFDDAL
YKLVAEGVLSVQEALKHADSINNLKLKLKLKLERQGETPTSSSGEWGLAD
Nucleotide
Download Length: 1113 bp
>NTDB_id=24834 PFL01_RS15495 WP_011334475.1 3530653..3531765(-) (pilU) [Pseudomonas fluorescens Pf0-1]
ATGGAAATCGACGCATTGCTCAAACAACTGGCGAGCCGCCACGGTTCGGATCTGTTCCTGTCCACGGGCGCACCGCCGAG
TGCGCGGTTCGACGGGGTGCTCACGCCCTTGAACGATCAGCCCTTCAAGCCCGGCGAAGTGGCGACTGTCGCCACCTCCC
TGATGGACGCCGAGCAGCGCCGGGAGTTCGACCGGGATCTGGAAATGAACCTGGCGATTTCCCGCACCGGCATCGGCCGC
TTCCGGGTCAATATATTCAAACAGCGCAACGATGTGTCAATCGTGATCCGTAACGTCAAACTCGACATTCCGCGATTCGA
AGACCTCAAATTGCCAGCGGTATTGCTGGAAACGGTGATGCTCAAACAGGGGCTGATCCTGTTTGTCGGTGCTACGGACT
CGGGCAAGTCGACCTCGCTGGCGGCATTGATCGATCATCGCAATCGCCATAGCAGCGGGCACATCATCACCATTGAAGAC
CCGGTGGAATACATCCATCGCCACAAGAAATCGATCATCAACCAGCGCGAAGTCGGGGTCGATACCCGCAGCTTTCACGC
TGCACTGAAAAACACCCTGCGCCAGGCCCCGGACGTGGTGCTGATCGGCGAGATCCGTGACCGCGAGACCATGGAGCATG
CGCTGGCCTTCGCCGAAACCGGGCATCTGGTGCTGTCGACATTGCACGCCAACAACGCCAATCAGGCGCTGGACCGGATC
ATCAATTTCTTTCCCGAAGAGCGTCGCCCGCAATTGCTGCACAGTTTAGGCAATCATTTGAAGGCCTTCGTTTCCCAACG
TCTGGTACGCACGCTTGATGGCCAGCGACGGGCGGCAGTGGAAGTCATGTTGGGGTCGCCCACCATTGCCGACCTCATTC
GTCGCAATGAACTGGGCGAGTTGAAAGTCATCATGGAAAAATCCACAGAGCTGGGCATGCAGACTTTCGATGACGCACTT
TACAAGTTGGTGGCTGAAGGTGTTTTAAGTGTGCAGGAGGCACTTAAACATGCGGACTCAATCAATAATTTGAAGTTGAA
GTTGAAGTTGAAGTTGGAGCGCCAAGGCGAGACGCCCACTTCAAGTTCGGGTGAATGGGGGCTGGCTGATTGA
ATGGAAATCGACGCATTGCTCAAACAACTGGCGAGCCGCCACGGTTCGGATCTGTTCCTGTCCACGGGCGCACCGCCGAG
TGCGCGGTTCGACGGGGTGCTCACGCCCTTGAACGATCAGCCCTTCAAGCCCGGCGAAGTGGCGACTGTCGCCACCTCCC
TGATGGACGCCGAGCAGCGCCGGGAGTTCGACCGGGATCTGGAAATGAACCTGGCGATTTCCCGCACCGGCATCGGCCGC
TTCCGGGTCAATATATTCAAACAGCGCAACGATGTGTCAATCGTGATCCGTAACGTCAAACTCGACATTCCGCGATTCGA
AGACCTCAAATTGCCAGCGGTATTGCTGGAAACGGTGATGCTCAAACAGGGGCTGATCCTGTTTGTCGGTGCTACGGACT
CGGGCAAGTCGACCTCGCTGGCGGCATTGATCGATCATCGCAATCGCCATAGCAGCGGGCACATCATCACCATTGAAGAC
CCGGTGGAATACATCCATCGCCACAAGAAATCGATCATCAACCAGCGCGAAGTCGGGGTCGATACCCGCAGCTTTCACGC
TGCACTGAAAAACACCCTGCGCCAGGCCCCGGACGTGGTGCTGATCGGCGAGATCCGTGACCGCGAGACCATGGAGCATG
CGCTGGCCTTCGCCGAAACCGGGCATCTGGTGCTGTCGACATTGCACGCCAACAACGCCAATCAGGCGCTGGACCGGATC
ATCAATTTCTTTCCCGAAGAGCGTCGCCCGCAATTGCTGCACAGTTTAGGCAATCATTTGAAGGCCTTCGTTTCCCAACG
TCTGGTACGCACGCTTGATGGCCAGCGACGGGCGGCAGTGGAAGTCATGTTGGGGTCGCCCACCATTGCCGACCTCATTC
GTCGCAATGAACTGGGCGAGTTGAAAGTCATCATGGAAAAATCCACAGAGCTGGGCATGCAGACTTTCGATGACGCACTT
TACAAGTTGGTGGCTGAAGGTGTTTTAAGTGTGCAGGAGGCACTTAAACATGCGGACTCAATCAATAATTTGAAGTTGAA
GTTGAAGTTGAAGTTGGAGCGCCAAGGCGAGACGCCCACTTCAAGTTCGGGTGAATGGGGGCTGGCTGATTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilU | Pseudomonas stutzeri DSM 10701 |
56.868 |
98.378 |
0.559 |
| pilU | Acinetobacter baylyi ADP1 |
53.239 |
95.946 |
0.511 |
| pilU | Vibrio cholerae strain A1552 |
51.42 |
95.135 |
0.489 |
| pilT | Vibrio cholerae strain A1552 |
40.541 |
90 |
0.365 |
| pilT | Vibrio cholerae O1 biovar El Tor strain E7946 |
40.541 |
90 |
0.365 |
| pilT | Legionella pneumophila strain Lp02 |
39.474 |
92.432 |
0.365 |
| pilT | Legionella pneumophila strain ERS1305867 |
39.474 |
92.432 |
0.365 |
| pilT | Pseudomonas aeruginosa PAK |
39.244 |
92.973 |
0.365 |
| pilT | Pseudomonas stutzeri DSM 10701 |
39.244 |
92.973 |
0.365 |