Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   NOC_RS01775 Genome accession   NC_007484
Coordinates   336895..338115 (-) Length   406 a.a.
NCBI ID   WP_002812627.1    Uniprot ID   Q3JEA7
Organism   Nitrosococcus oceani ATCC 19707     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 331895..343115
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NOC_RS01740 (Noc_0303) nadA 332177..333274 (+) 1098 WP_002812115.1 quinolinate synthase NadA -
  NOC_RS01745 (Noc_0304) - 333329..333547 (+) 219 WP_002811869.1 zinc-finger domain-containing protein -
  NOC_RS01750 (Noc_0305) - 333623..333823 (-) 201 WP_002814049.1 DUF2905 domain-containing protein -
  NOC_RS01755 (Noc_0306) - 333869..334834 (+) 966 WP_002813165.1 Nudix family hydrolase -
  NOC_RS16595 (Noc_0307) - 334831..335142 (+) 312 WP_011330295.1 hypothetical protein -
  NOC_RS01760 (Noc_0308) - 335156..335344 (-) 189 WP_002811855.1 DNA gyrase inhibitor YacG -
  NOC_RS01765 (Noc_0309) coaE 335350..336000 (-) 651 WP_002812172.1 dephospho-CoA kinase -
  NOC_RS01770 (Noc_0310) pilD 336009..336875 (-) 867 WP_002812209.1 prepilin peptidase Machinery gene
  NOC_RS01775 (Noc_0311) pilC 336895..338115 (-) 1221 WP_002812627.1 type II secretion system F family protein Machinery gene
  NOC_RS01780 (Noc_0312) pilB 338120..339835 (-) 1716 WP_011330296.1 type IV-A pilus assembly ATPase PilB Machinery gene
  NOC_RS01790 (Noc_0314) lysA 340170..341420 (+) 1251 WP_172633718.1 diaminopimelate decarboxylase -
  NOC_RS01795 (Noc_0315) - 341471..342142 (+) 672 WP_011330298.1 class I SAM-dependent methyltransferase -
  NOC_RS01800 (Noc_0316) dapF 342181..343011 (+) 831 WP_002812566.1 diaminopimelate epimerase -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 44351.64 Da        Isoelectric Point: 10.1337

>NTDB_id=24808 NOC_RS01775 WP_002812627.1 336895..338115(-) (pilC) [Nitrosococcus oceani ATCC 19707]
MAQAAAKQQIFIWEGANRQGHKIKGEVGGKNLSMVKADLRRQGIVPLKVRKKPKSLLGQRKKKITPKEIAIFSRQLATMM
AAGVPLVQAFEIIGRGHESISMQEMVLKIKGEVEGGGTLAEALKQHPRQFDPLFCNLVHAGEQSGTLETLLDKIAMYKEK
TEAIKGKIKKALFYPTAVVVVAFIITAILLIFVIPQFEALFQNFGADLPALTLLVLKLSALFQEWWWAIFGAMGGAIYGL
MEAKRRSQKINHLFDRLLLKLPVIGEILNKATIARYARTLSTMFAAGVPLVEAMVSVAGAAGNSVYTQAILRIRDEVSTG
TQLQAAMRSSQLFPNMVVQMVAIGEEAGSIDQMLSKVADFYEEEVDNAVDALSSLLEPLIMAILGVLVGGLVIAMYLPIF
KMGSVV

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=24808 NOC_RS01775 WP_002812627.1 336895..338115(-) (pilC) [Nitrosococcus oceani ATCC 19707]
ATGGCACAAGCGGCAGCAAAACAGCAAATTTTTATATGGGAAGGCGCTAACCGGCAAGGACATAAAATTAAAGGCGAAGT
AGGCGGTAAAAACCTCAGCATGGTGAAGGCGGATCTGCGACGCCAGGGTATTGTGCCCCTCAAGGTGCGCAAAAAGCCTA
AGTCTCTGCTCGGTCAGCGCAAGAAAAAAATCACCCCGAAGGAGATCGCGATATTTAGCCGTCAACTTGCAACCATGATG
GCCGCGGGCGTACCCCTGGTTCAAGCCTTCGAAATTATAGGCCGCGGCCATGAAAGCATCTCCATGCAAGAGATGGTCCT
AAAAATCAAGGGGGAAGTGGAAGGTGGCGGCACCTTGGCCGAAGCGCTTAAACAACATCCACGGCAATTTGATCCGCTTT
TTTGCAACCTGGTCCACGCGGGAGAGCAATCCGGCACTCTAGAAACGCTGCTGGATAAAATCGCCATGTATAAAGAAAAA
ACAGAAGCCATCAAGGGAAAGATAAAAAAAGCATTATTTTATCCTACCGCTGTGGTGGTGGTCGCTTTTATTATTACTGC
TATTTTGCTCATCTTTGTTATTCCCCAATTTGAGGCTTTGTTCCAGAACTTCGGCGCCGATCTGCCCGCCCTCACCTTGC
TAGTCCTCAAGCTTTCCGCTCTTTTTCAAGAATGGTGGTGGGCCATTTTCGGAGCTATGGGAGGCGCTATCTACGGTCTT
ATGGAGGCTAAACGGCGCTCGCAAAAGATTAACCATCTCTTCGATAGACTACTACTCAAATTGCCGGTGATCGGCGAAAT
CCTGAATAAGGCAACTATCGCCCGGTATGCCCGCACCCTCTCCACCATGTTTGCGGCCGGCGTCCCCTTGGTGGAAGCCA
TGGTTTCCGTGGCCGGCGCTGCGGGTAATTCTGTCTATACTCAAGCCATCCTCCGTATACGCGATGAGGTCTCCACCGGC
ACCCAGCTACAAGCGGCTATGCGCAGTAGCCAATTATTTCCTAACATGGTGGTGCAGATGGTGGCTATCGGGGAAGAGGC
GGGTTCAATTGATCAAATGCTGAGCAAAGTGGCGGATTTCTACGAAGAAGAAGTAGATAATGCGGTCGATGCCCTGAGCA
GCTTGCTAGAACCCCTCATCATGGCAATACTAGGCGTTCTGGTAGGCGGCCTTGTTATCGCAATGTACTTACCCATCTTC
AAAATGGGTTCAGTAGTTTAA

Domains

Predicted by InterProScan.

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)

Type II secretion system (T2SS), protein F (T2SSF)

(277-398)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

59.606

100

0.596
  pilC Legionella pneumophila strain ERS1305867

59.596

97.537

0.581
  pilC Acinetobacter baumannii D1279779

58.438

97.783

0.571
  pilC Acinetobacter baylyi ADP1

56.757

100

0.569
  pilG Neisseria gonorrhoeae MS11

48.387

99.261

0.48
  pilG Neisseria meningitidis 44/76-A

48.387

99.261

0.48
  pilC Vibrio cholerae strain A1552

42.677

97.537

0.416
  pilC Vibrio campbellii strain DS40M4

40.394

100

0.404
  pilC Thermus thermophilus HB27

35.971

100

0.369

Multiple sequence alignment