Detailed information NTG0024807

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: NOC_RS01770
• Genome accession: NC_007484
• Coordinates: 336009..336875 (-)
• Length: 288 a.a.
• NCBI ID: WP_002812209.1
• Uniprot ID: Q3JEA8
• Organism: Nitrosococcus oceani ATCC 19707
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 331009..341875

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NOC_RS01740 (Noc_0303)	nadA	332177..333274 (+)	1098	WP_002812115.1	quinolinate synthase NadA	-
NOC_RS01745 (Noc_0304)	-	333329..333547 (+)	219	WP_002811869.1	zinc-finger domain-containing protein	-
NOC_RS01750 (Noc_0305)	-	333623..333823 (-)	201	WP_002814049.1	DUF2905 domain-containing protein	-
NOC_RS01755 (Noc_0306)	-	333869..334834 (+)	966	WP_002813165.1	Nudix family hydrolase	-
NOC_RS16595 (Noc_0307)	-	334831..335142 (+)	312	WP_011330295.1	hypothetical protein	-
NOC_RS01760 (Noc_0308)	-	335156..335344 (-)	189	WP_002811855.1	DNA gyrase inhibitor YacG	-
NOC_RS01765 (Noc_0309)	coaE	335350..336000 (-)	651	WP_002812172.1	dephospho-CoA kinase	-
NOC_RS01770 (Noc_0310)	pilD	336009..336875 (-)	867	WP_002812209.1	prepilin peptidase	Machinery gene
NOC_RS01775 (Noc_0311)	pilC	336895..338115 (-)	1221	WP_002812627.1	type II secretion system F family protein	Machinery gene
NOC_RS01780 (Noc_0312)	pilB	338120..339835 (-)	1716	WP_011330296.1	type IV-A pilus assembly ATPase PilB	Machinery gene
NOC_RS01790 (Noc_0314)	lysA	340170..341420 (+)	1251	WP_172633718.1	diaminopimelate decarboxylase	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 32481.40 Da
• Isoelectric Point: 7.7269

>NTDB_id=24807 NOC_RS01770 WP_002812209.1 336009..336875(-) (pilD) [Nitrosococcus oceani ATCC 19707]
MEAIVFFESHPAAFMASAFLLGLTVGSFLNVVIYRLPLMMERQWEEQCAELHGKPQPEREPLTLSLPRSHCPACRRTIRA
QENIPLFSYLLLRGRCRHCKAPISLRYPLVELLTGILSIAVAWRFGVSWETMAALLLSYALITLTFIDFDHQLLPDNITL
PFLWFGLGLGLFEVFTDARTSLIGAITGYLSLWLVYHLFRLLTKKEGMGYGDFKLLALLGAWLGWTMLPAIILLSSIVGA
LLGTAWLYLSSQHRETPIPFGPYLAAAGWLALMWGQDINQFYLSLTGR

Nucleotide

• Length: 867 bp

>NTDB_id=24807 NOC_RS01770 WP_002812209.1 336009..336875(-) (pilD) [Nitrosococcus oceani ATCC 19707]
ATGGAAGCTATTGTTTTTTTCGAGAGTCATCCCGCTGCCTTTATGGCATCAGCCTTTCTGCTGGGCTTAACCGTCGGCAG
TTTCCTCAATGTCGTCATTTACCGCCTTCCTCTCATGATGGAAAGGCAGTGGGAAGAGCAGTGTGCAGAATTACATGGCA
AGCCACAGCCGGAGCGGGAACCGTTAACGCTCTCTCTCCCCCGCTCTCACTGCCCCGCCTGCCGTCGTACAATCCGGGCA
CAGGAGAACATTCCCTTATTCAGCTACCTCTTGCTTAGGGGACGCTGCCGTCACTGCAAAGCGCCTATCTCTCTCCGCTA
TCCCCTGGTAGAGCTACTAACCGGTATCCTTTCTATTGCCGTAGCTTGGCGCTTTGGCGTCAGCTGGGAAACAATGGCAG
CATTGCTCTTAAGCTATGCGCTGATTACGCTCACCTTTATTGATTTCGATCATCAACTGCTGCCTGACAATATTACGCTC
CCTTTTCTTTGGTTTGGTTTAGGGCTAGGTTTATTTGAAGTGTTCACGGATGCCCGAACCAGTCTTATTGGTGCGATAAC
AGGTTATCTTTCCCTATGGCTGGTTTACCATCTGTTTCGGCTGCTAACCAAGAAAGAGGGCATGGGGTACGGCGACTTCA
AACTTTTAGCACTTCTTGGGGCTTGGCTAGGCTGGACGATGCTGCCTGCCATTATTTTGCTTTCCTCGATAGTAGGCGCC
CTGTTAGGGACCGCATGGCTTTATCTTTCCAGCCAACACCGGGAGACCCCTATCCCATTCGGCCCTTATCTCGCTGCCGC
GGGCTGGCTTGCCTTGATGTGGGGACAGGATATCAATCAATTTTATCTTTCTCTAACCGGAAGATAA

Domains

Predicted by InterProScan.

• Type IV leader peptidase family (Peptidase_A24) (136-243)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-125)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	55.477	98.264	0.545
pilD	Vibrio campbellii strain DS40M4	54.035	98.958	0.535
pilD	Acinetobacter nosocomialis M2	50.175	98.958	0.497
pilD	Acinetobacter baumannii D1279779	49.474	98.958	0.49
pilD	Neisseria gonorrhoeae MS11	50.196	88.542	0.444