Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   CO687_RS05175 Genome accession   NZ_CP023511
Coordinates   1048335..1050335 (+) Length   666 a.a.
NCBI ID   WP_096755019.1    Uniprot ID   -
Organism   Streptococcus gordonii strain FDAARGOS_371     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1043335..1055335
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CO687_RS05165 (CO687_05165) amiA3 1043867..1045825 (+) 1959 WP_096755018.1 peptide ABC transporter substrate-binding protein Regulator
  CO687_RS05170 (CO687_05170) amiA 1046075..1048057 (+) 1983 WP_053794410.1 peptide ABC transporter substrate-binding protein Regulator
  CO687_RS05175 (CO687_05175) amiA 1048335..1050335 (+) 2001 WP_096755019.1 peptide ABC transporter substrate-binding protein Regulator
  CO687_RS05180 (CO687_05180) amiC 1050400..1051896 (+) 1497 WP_048777855.1 ABC transporter permease Regulator
  CO687_RS05185 (CO687_05185) amiD 1051896..1052822 (+) 927 WP_045634045.1 oligopeptide ABC transporter permease OppC Regulator
  CO687_RS05190 (CO687_05190) amiE 1052831..1053898 (+) 1068 WP_008809622.1 ABC transporter ATP-binding protein Regulator
  CO687_RS05195 (CO687_05195) amiF 1053909..1054832 (+) 924 WP_012130756.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 666 a.a.        Molecular weight: 73602.98 Da        Isoelectric Point: 5.0825

>NTDB_id=247973 CO687_RS05175 WP_096755019.1 1048335..1050335(+) (amiA) [Streptococcus gordonii strain FDAARGOS_371]
MKKGKILTLAGVALLATGVLAACSNSTSNSSNSSSSSSSGADQAFNYIYEVDPENLNYLISSKAATTDLTANLIDGLLEN
DNYGNLVPSMAEDWTVSKDGLTYTYKLRKDAKWYTSDGEEYADVKAQDFVAGLKYAADNKSETLYLVQSSIKGLDDYVNG
KTKDFSSVGVKAVDDHTVQYTLNEPESFWNSKTTMGILYPVNEEFLKSKGDKFAQAADPTSLLYNGPFLLKSITSKSSIE
FAKNPNYWDKDNVHVSDVKLTYFDGQDQGKPAEQFAKGALSAARLAPTSATFSKVEKEFKDNIVYTPQDSSSYLVGVNID
RQAYNHTAKSSDAQKSSTKKALMNKDFRQALSFAFDRTAYASQVNGKEGATKMLRNLYIPPTFVQADGKSFGELVKEKVA
SYGDEWKDVNFDDAQDGLYNKEKAKAEFAKAKKALQEEGVEFPIHLDMPVDQTASAKVQRVQSLKQSIESSLGTDNVVVD
IHQMKTDDVLNITYYAASAAEEDWDISDNVGWSPDYQDPSTYLEIIKPGGENTKTFLGFDGKENAAADQVGLKEYAKLVD
EAAAEKTDVNKRYEKYATAQAWLTDSALLIPTTSRTGRPVLTKIVPFTAPFAWSGAKGRDMASYKYLKLQDKAVTAKEYQ
KAQEKWNKERAESNKKAQEELEKHVK

Nucleotide


Download         Length: 2001 bp        

>NTDB_id=247973 CO687_RS05175 WP_096755019.1 1048335..1050335(+) (amiA) [Streptococcus gordonii strain FDAARGOS_371]
ATGAAGAAAGGTAAAATCCTTACACTTGCGGGAGTCGCTCTCTTGGCTACTGGCGTTCTTGCAGCGTGCTCAAATTCTAC
ATCAAACTCATCAAACTCATCAAGCTCATCAAGCTCTGGCGCAGATCAAGCTTTTAACTATATCTACGAAGTTGATCCAG
AAAACTTGAATTATTTGATCTCTAGTAAAGCAGCAACAACTGACCTTACAGCTAACTTGATTGATGGTCTTTTGGAAAAT
GACAACTATGGAAACTTGGTTCCATCGATGGCTGAAGATTGGACAGTGTCTAAGGATGGCTTGACTTATACTTATAAACT
TCGTAAGGATGCTAAATGGTATACTTCTGATGGTGAAGAATATGCTGATGTCAAGGCACAAGACTTTGTGGCAGGTCTAA
AGTACGCTGCTGACAACAAGTCTGAAACTCTTTATCTTGTTCAAAGTTCTATCAAGGGCTTGGATGACTACGTTAATGGT
AAAACAAAGGATTTCTCATCAGTTGGTGTTAAAGCAGTTGATGACCACACAGTTCAATATACTTTAAATGAGCCAGAAAG
TTTCTGGAACTCTAAAACAACAATGGGTATCCTTTATCCGGTCAATGAAGAGTTCTTGAAGTCTAAAGGCGACAAGTTTG
CTCAAGCTGCTGACCCAACTAGTCTTCTATACAACGGGCCATTCCTACTAAAATCTATCACATCTAAATCATCTATTGAA
TTTGCTAAAAATCCAAATTATTGGGATAAAGATAATGTCCATGTGAGCGATGTTAAATTAACATATTTTGACGGGCAAGA
TCAAGGTAAACCAGCTGAGCAATTTGCTAAAGGTGCTCTAAGTGCGGCTAGACTGGCTCCTACAAGTGCTACCTTCTCTA
AAGTAGAAAAAGAATTCAAAGATAATATCGTTTATACTCCTCAAGATTCTTCAAGCTATTTAGTTGGGGTGAACATTGAT
CGTCAAGCGTACAATCACACAGCTAAGTCAAGTGATGCACAAAAATCATCAACAAAGAAAGCTTTGATGAATAAAGATTT
CCGTCAAGCTTTGAGTTTTGCATTCGACAGAACGGCTTATGCTTCACAAGTTAATGGTAAAGAAGGGGCTACGAAAATGC
TCCGCAATCTCTACATTCCACCTACTTTTGTTCAGGCAGATGGTAAGAGCTTCGGTGAACTTGTGAAAGAAAAAGTGGCT
AGCTATGGAGATGAGTGGAAAGATGTAAACTTCGACGATGCTCAAGATGGTCTTTACAATAAAGAAAAAGCTAAAGCTGA
ATTTGCGAAAGCTAAAAAAGCTCTCCAAGAAGAAGGTGTAGAATTCCCTATTCATTTGGATATGCCAGTAGACCAAACTG
CTAGTGCTAAAGTTCAGCGCGTTCAATCTTTGAAACAATCAATTGAGAGCTCGCTTGGGACAGATAATGTGGTTGTTGAC
ATTCATCAAATGAAGACTGATGATGTTTTGAACATCACATATTATGCTGCTTCAGCTGCTGAAGAAGACTGGGATATTTC
TGATAATGTTGGTTGGTCTCCTGACTATCAAGATCCATCAACTTATCTTGAAATTATTAAGCCTGGCGGTGAAAACACCA
AAACATTCTTAGGGTTTGATGGTAAAGAAAATGCAGCTGCAGACCAAGTTGGTTTGAAGGAGTATGCTAAGCTAGTTGAT
GAAGCTGCCGCTGAAAAGACAGATGTAAACAAACGCTATGAAAAATATGCAACTGCTCAAGCATGGCTAACAGATAGCGC
CTTGTTGATACCAACAACAAGTAGGACTGGACGTCCAGTTTTAACTAAGATTGTACCATTTACAGCTCCTTTTGCTTGGT
CTGGTGCTAAAGGTCGTGACATGGCAAGTTACAAATATCTGAAATTACAAGATAAAGCTGTCACAGCCAAGGAATATCAG
AAAGCTCAAGAAAAATGGAATAAAGAACGTGCAGAATCTAATAAAAAAGCACAAGAAGAGTTAGAAAAACACGTGAAATA
A

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(86-529)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

60.03

100

0.602
  amiA3 Streptococcus thermophilus LMD-9

59.281

100

0.595
  amiA3 Streptococcus thermophilus LMG 18311

58.832

100

0.59

Multiple sequence alignment