Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   CO687_RS05180 Genome accession   NZ_CP023511
Coordinates   1050400..1051896 (+) Length   498 a.a.
NCBI ID   WP_048777855.1    Uniprot ID   -
Organism   Streptococcus gordonii strain FDAARGOS_371     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1045400..1056896
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CO687_RS05170 (CO687_05170) amiA 1046075..1048057 (+) 1983 WP_053794410.1 peptide ABC transporter substrate-binding protein Regulator
  CO687_RS05175 (CO687_05175) amiA 1048335..1050335 (+) 2001 WP_096755019.1 peptide ABC transporter substrate-binding protein Regulator
  CO687_RS05180 (CO687_05180) amiC 1050400..1051896 (+) 1497 WP_048777855.1 ABC transporter permease Regulator
  CO687_RS05185 (CO687_05185) amiD 1051896..1052822 (+) 927 WP_045634045.1 oligopeptide ABC transporter permease OppC Regulator
  CO687_RS05190 (CO687_05190) amiE 1052831..1053898 (+) 1068 WP_008809622.1 ABC transporter ATP-binding protein Regulator
  CO687_RS05195 (CO687_05195) amiF 1053909..1054832 (+) 924 WP_012130756.1 ATP-binding cassette domain-containing protein Regulator
  CO687_RS05200 (CO687_05200) comR/comR2 1055033..1055515 (+) 483 WP_061598896.1 sigma-70 family RNA polymerase sigma factor Regulator

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 55579.59 Da        Isoelectric Point: 9.9197

>NTDB_id=247974 CO687_RS05180 WP_048777855.1 1050400..1051896(+) (amiC) [Streptococcus gordonii strain FDAARGOS_371]
MKKYIFMRILRSLVSIFLVTALTYTIIYTMVPRKLIFKQDPNYNKIATTKDKKANYENTIYERMGYVDYYDTKELQEKAS
KEDSSVTVEGTDANKKIYEAYIKKLGNGWKLHQFEESKQFYAVREVPVLERVLGFYGNLIQFDHTGFVKDETNPKLKRYI
RIENDPAIGWSVVGSGTKHKYLLYFNAQFPFVHQNFVTLNLGNSYPTYANIPVLQVISQGQGQTKSSEVQFPTGKKISSV
NIYSRTYKSPSKADSRDIANYGKDDPYTATESNYQYPSMLVSSAIIGLIGIAISYLIAVPLGSYMARFKNTWIDSSLTGL
LTFLLALPTIALVYIIRLGGSSVGLPDSFPVLGAGDWRSYVLPAVILGLLGAPSTAIWIRRYMIDLQSQDFVRFARAKGL
SEKEISNKHIFKNAMVPLVSGIPGAVIGVIQGATLTETVFAFPGMGKMLIDSVKASNNSMVVGLVFIFTGLSVFALLLGD
ILMTMLDPRIKLTTKGGK

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=247974 CO687_RS05180 WP_048777855.1 1050400..1051896(+) (amiC) [Streptococcus gordonii strain FDAARGOS_371]
ATGAAGAAATATATATTTATGCGTATCTTACGCTCCCTGGTGTCGATTTTCTTAGTAACGGCTTTGACCTATACCATTAT
TTATACAATGGTGCCAAGAAAATTGATTTTTAAACAGGACCCTAACTATAACAAGATAGCAACCACAAAAGATAAAAAAG
CTAATTACGAAAACACAATCTATGAACGTATGGGCTATGTGGATTATTATGATACGAAAGAGTTACAGGAGAAAGCTAGC
AAGGAAGATAGCTCTGTAACGGTTGAAGGAACTGATGCAAACAAAAAAATCTACGAAGCTTATATCAAAAAATTAGGTAA
TGGCTGGAAGCTTCATCAATTTGAAGAAAGCAAGCAGTTTTATGCTGTTCGTGAGGTGCCAGTTCTAGAACGTGTTCTTG
GCTTCTATGGGAATTTAATTCAATTTGACCATACTGGTTTTGTCAAAGATGAAACGAATCCAAAACTTAAACGTTATATT
CGTATTGAAAACGACCCTGCTATTGGTTGGTCTGTAGTTGGATCAGGGACTAAGCATAAATATTTACTATACTTTAATGC
TCAATTTCCGTTTGTTCATCAAAATTTTGTGACCTTGAACCTAGGAAATTCTTACCCAACTTATGCAAATATTCCTGTGT
TACAGGTTATTTCACAAGGACAAGGACAAACTAAATCATCTGAAGTTCAATTCCCTACAGGAAAGAAAATTTCATCAGTT
AATATCTATTCACGAACTTACAAGTCACCAAGTAAAGCTGATTCGCGAGATATTGCAAACTATGGAAAAGATGATCCATA
TACAGCTACAGAGAGCAACTATCAATATCCATCCATGCTTGTTAGCTCAGCAATTATTGGTTTGATTGGTATTGCGATCT
CTTATCTGATTGCTGTCCCATTAGGGTCTTACATGGCTCGCTTCAAAAACACTTGGATTGATAGTTCATTAACGGGTCTC
TTGACCTTCCTTTTGGCCCTACCAACAATTGCCTTGGTTTATATTATTCGCTTAGGTGGTTCTTCGGTTGGTCTTCCAGA
TTCTTTCCCAGTTCTTGGTGCAGGAGACTGGCGTTCATATGTTCTTCCGGCAGTAATTCTGGGACTTTTGGGCGCGCCAA
GCACAGCTATCTGGATTCGTCGTTATATGATCGACTTGCAATCCCAAGACTTTGTACGTTTTGCCCGTGCTAAAGGATTA
TCTGAAAAAGAAATTTCAAATAAACACATTTTCAAAAATGCCATGGTTCCATTGGTATCAGGAATTCCAGGGGCTGTTAT
TGGAGTTATTCAAGGGGCAACCTTGACAGAGACTGTCTTCGCTTTCCCTGGTATGGGTAAAATGTTGATCGACTCAGTTA
AAGCTTCAAATAATTCTATGGTAGTCGGATTGGTCTTCATTTTCACTGGTTTATCAGTCTTTGCCTTACTCTTAGGTGAT
ATTTTGATGACAATGCTTGACCCACGTATTAAATTAACAACAAAAGGAGGTAAATAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(298-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

79.116

100

0.791
  amiC Streptococcus thermophilus LMG 18311

78.715

100

0.787
  amiC Streptococcus thermophilus LMD-9

78.514

100

0.785

Multiple sequence alignment