Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   CO687_RS05195 Genome accession   NZ_CP023511
Coordinates   1053909..1054832 (+) Length   307 a.a.
NCBI ID   WP_012130756.1    Uniprot ID   A0AAQ2V108
Organism   Streptococcus gordonii strain FDAARGOS_371     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1048909..1059832
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CO687_RS05180 (CO687_05180) amiC 1050400..1051896 (+) 1497 WP_048777855.1 ABC transporter permease Regulator
  CO687_RS05185 (CO687_05185) amiD 1051896..1052822 (+) 927 WP_045634045.1 oligopeptide ABC transporter permease OppC Regulator
  CO687_RS05190 (CO687_05190) amiE 1052831..1053898 (+) 1068 WP_008809622.1 ABC transporter ATP-binding protein Regulator
  CO687_RS05195 (CO687_05195) amiF 1053909..1054832 (+) 924 WP_012130756.1 ATP-binding cassette domain-containing protein Regulator
  CO687_RS05200 (CO687_05200) comR/comR2 1055033..1055515 (+) 483 WP_061598896.1 sigma-70 family RNA polymerase sigma factor Regulator

Sequence

Protein


Download         Length: 307 a.a.        Molecular weight: 34922.14 Da        Isoelectric Point: 6.7109

>NTDB_id=247977 CO687_RS05195 WP_012130756.1 1053909..1054832(+) (amiF) [Streptococcus gordonii strain FDAARGOS_371]
MSEKLVEVKDLEISFGEGKKKFVAVKNANFFINRGETFSLVGESGSGKTTIGRAIIGLNETSKGEIFFDGKQINGKKSRK
ESSEIIRKIQMIFQDPAASLNERATVDYIISEGLYNYHLFENEEERIQKVKNIIHEVGLLSEHLTRYPHEFSGGQRQRIG
IARALVMQPDFVIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGVIVEVAETEELFN
NPIHPYTKSLLSAVPIPDPILERKKVLKVYDPDQHDYSVEKPEMVEIKPGHFVWANKTEVENYKKEL

Nucleotide


Download         Length: 924 bp        

>NTDB_id=247977 CO687_RS05195 WP_012130756.1 1053909..1054832(+) (amiF) [Streptococcus gordonii strain FDAARGOS_371]
ATGTCTGAAAAATTAGTAGAAGTTAAAGATTTGGAGATTTCCTTTGGTGAAGGGAAGAAGAAATTTGTCGCTGTTAAAAA
TGCAAATTTCTTTATTAATAGAGGTGAAACTTTCTCGCTCGTAGGTGAATCCGGTTCAGGGAAAACTACAATTGGTCGTG
CAATCATTGGTTTGAATGAGACGAGTAAAGGTGAAATCTTCTTTGATGGTAAGCAGATTAATGGGAAGAAGTCTAGAAAA
GAATCTTCGGAAATTATTCGTAAGATTCAAATGATATTCCAGGATCCTGCTGCGAGCTTAAACGAGCGTGCAACAGTTGA
CTATATCATTTCTGAGGGCTTGTACAACTATCATTTGTTTGAAAATGAAGAAGAAAGAATACAAAAGGTTAAGAATATTA
TTCATGAAGTTGGATTGCTTTCTGAACATTTGACGCGTTATCCGCATGAATTCTCAGGAGGGCAACGCCAACGTATTGGG
ATAGCGCGGGCTTTAGTCATGCAACCAGATTTCGTTATTGCTGATGAACCAATTTCTGCTTTGGATGTATCCGTTCGTGC
TCAAGTGCTAAATCTTCTAAAGAAATTCCAAAAAGAACTGGGGTTGACCTATCTATTTATCGCTCACGATTTGTCAGTGG
TACGTTTCATTTCAGATCGTATTGCAGTAATCTATAAAGGTGTAATTGTTGAAGTAGCTGAAACGGAAGAGCTCTTTAAT
AACCCAATTCATCCTTATACCAAATCGTTATTATCAGCCGTTCCAATTCCAGATCCAATCTTAGAACGTAAAAAAGTACT
TAAAGTCTACGATCCGGATCAACATGACTATTCAGTTGAAAAACCTGAAATGGTTGAAATTAAACCTGGCCACTTTGTTT
GGGCTAACAAAACCGAAGTAGAGAACTATAAAAAAGAGCTCTAA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)

ABC transporter (ABC_tran)

(25-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMG 18311

86.601

99.674

0.863
  amiF Streptococcus thermophilus LMD-9

86.275

99.674

0.86
  amiF Streptococcus salivarius strain HSISS4

85.621

99.674

0.853

Multiple sequence alignment