Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   CO687_RS05185 Genome accession   NZ_CP023511
Coordinates   1051896..1052822 (+) Length   308 a.a.
NCBI ID   WP_045634045.1    Uniprot ID   -
Organism   Streptococcus gordonii strain FDAARGOS_371     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1046896..1057822
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CO687_RS05175 (CO687_05175) amiA 1048335..1050335 (+) 2001 WP_096755019.1 peptide ABC transporter substrate-binding protein Regulator
  CO687_RS05180 (CO687_05180) amiC 1050400..1051896 (+) 1497 WP_048777855.1 ABC transporter permease Regulator
  CO687_RS05185 (CO687_05185) amiD 1051896..1052822 (+) 927 WP_045634045.1 oligopeptide ABC transporter permease OppC Regulator
  CO687_RS05190 (CO687_05190) amiE 1052831..1053898 (+) 1068 WP_008809622.1 ABC transporter ATP-binding protein Regulator
  CO687_RS05195 (CO687_05195) amiF 1053909..1054832 (+) 924 WP_012130756.1 ATP-binding cassette domain-containing protein Regulator
  CO687_RS05200 (CO687_05200) comR/comR2 1055033..1055515 (+) 483 WP_061598896.1 sigma-70 family RNA polymerase sigma factor Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34631.59 Da        Isoelectric Point: 9.7223

>NTDB_id=247975 CO687_RS05185 WP_045634045.1 1051896..1052822(+) (amiD) [Streptococcus gordonii strain FDAARGOS_371]
MASIDKNKFQFVKRDDFASEAIDAPAYSYWRSVIRQFLKKKSTIVMLAILLTIILMSFIYPMLSDFDYNDVSKVNDFSAR
YIAPNGKYWFGTDSNGKSLFDGVWFGARNSILISVIATAINLIIGIVVGGIWGISKSVDRVMMEVYNVISNIPQLLIVIV
LTYSIGAGFWNLIFAMTITSWISIAYLIRVQIMRYRDLEYNLASRTLGTSTFKIVARNIMPQLVSVIMTTSSQMLPSFIS
YEAFLSFFGLGLPVTVPSLGRLISDYSQNVTTNAYLFWIPLTTLILVSLSLFIVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=247975 CO687_RS05185 WP_045634045.1 1051896..1052822(+) (amiD) [Streptococcus gordonii strain FDAARGOS_371]
ATGGCTTCTATTGATAAAAATAAATTCCAATTTGTCAAACGCGATGATTTTGCCTCTGAAGCAATTGATGCTCCGGCCTA
TTCATACTGGAGATCTGTTATTCGTCAATTTCTGAAAAAGAAATCTACCATTGTTATGTTGGCGATTTTACTAACCATTA
TTTTAATGAGTTTTATTTACCCAATGTTGTCTGACTTTGATTATAACGATGTAAGTAAAGTTAATGATTTTAGTGCTCGT
TATATTGCGCCAAATGGAAAATATTGGTTTGGTACAGATAGCAATGGTAAATCTCTCTTTGATGGAGTATGGTTTGGTGC
TCGTAATTCTATCTTGATTTCCGTTATTGCGACAGCCATTAACTTGATCATTGGGATTGTTGTTGGTGGTATTTGGGGGA
TTTCTAAATCTGTTGACCGCGTTATGATGGAAGTTTATAATGTCATCTCAAATATTCCGCAATTATTGATTGTTATTGTC
TTGACTTATTCAATCGGAGCTGGATTCTGGAATCTAATCTTTGCCATGACAATTACTTCATGGATTTCGATTGCTTACTT
AATTCGTGTACAAATCATGCGGTATCGTGATTTAGAGTACAACCTTGCCAGCCGTACTTTGGGAACGTCTACTTTTAAAA
TTGTTGCTCGAAACATTATGCCACAACTGGTATCTGTTATCATGACAACTAGCTCTCAAATGCTGCCAAGCTTTATCTCT
TATGAAGCCTTCCTTTCTTTCTTTGGTTTGGGGCTTCCAGTAACTGTGCCAAGTTTAGGACGTTTGATTTCTGACTATTC
ACAAAACGTTACAACCAATGCTTACCTTTTCTGGATTCCATTGACAACCTTGATTTTGGTATCCTTGTCCCTTTTCATCG
TCGGACAAAATTTGGCGGATGCTAGTGATCCACGTACACATAGATAG

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-306)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

82.468

100

0.825
  amiD Streptococcus thermophilus LMG 18311

81.494

100

0.815
  amiD Streptococcus thermophilus LMD-9

81.494

100

0.815

Multiple sequence alignment