Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   CO687_RS05190 Genome accession   NZ_CP023511
Coordinates   1052831..1053898 (+) Length   355 a.a.
NCBI ID   WP_008809622.1    Uniprot ID   A0A0F2CNN2
Organism   Streptococcus gordonii strain FDAARGOS_371     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1047831..1058898
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CO687_RS05175 (CO687_05175) amiA 1048335..1050335 (+) 2001 WP_096755019.1 peptide ABC transporter substrate-binding protein Regulator
  CO687_RS05180 (CO687_05180) amiC 1050400..1051896 (+) 1497 WP_048777855.1 ABC transporter permease Regulator
  CO687_RS05185 (CO687_05185) amiD 1051896..1052822 (+) 927 WP_045634045.1 oligopeptide ABC transporter permease OppC Regulator
  CO687_RS05190 (CO687_05190) amiE 1052831..1053898 (+) 1068 WP_008809622.1 ABC transporter ATP-binding protein Regulator
  CO687_RS05195 (CO687_05195) amiF 1053909..1054832 (+) 924 WP_012130756.1 ATP-binding cassette domain-containing protein Regulator
  CO687_RS05200 (CO687_05200) comR/comR2 1055033..1055515 (+) 483 WP_061598896.1 sigma-70 family RNA polymerase sigma factor Regulator

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 39824.61 Da        Isoelectric Point: 4.8872

>NTDB_id=247976 CO687_RS05190 WP_008809622.1 1052831..1053898(+) (amiE) [Streptococcus gordonii strain FDAARGOS_371]
MIQNKNVILTARDIVVEFDVRDKVLTAIRGVSLDLVEGEVLALVGESGSGKSVLTKTFTGMLEDNGRVAQGVINYRGQDL
TTLKSNKDWEKIRGAKIATIFQDPMTSLDPINTIGSQITEVIIKHQGKDAKEAKEMAIDYMKKVGIPDAERRFEEYPFQY
SGGMRQRIVIAIALACRPDILICDEPTTALDVTIQAQIIELLKSLQNEYRFTTIFITHDLGVVASIADKVAVMYAGEIVE
YGTVEEIFYDPRHPYTWSLLSSLPQLANDHGELFSIPGTPPSLYTELKGDAFALRSDYAMQIDFEEKAPQFQVTETHWAK
TWLLHEDAPKVHKPEIIENLHDKIRLNMGFAHLEG

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=247976 CO687_RS05190 WP_008809622.1 1052831..1053898(+) (amiE) [Streptococcus gordonii strain FDAARGOS_371]
ATGATACAAAATAAAAATGTAATATTGACTGCTCGCGATATTGTCGTGGAATTTGACGTTCGTGATAAAGTCCTGACAGC
CATCCGAGGTGTATCCCTTGATTTGGTTGAAGGGGAAGTATTAGCTTTGGTAGGAGAATCAGGATCAGGTAAGTCTGTGT
TGACTAAAACATTCACTGGGATGTTGGAAGATAATGGGCGCGTTGCGCAAGGTGTTATTAACTACCGTGGTCAAGATTTG
ACAACTTTAAAATCAAATAAAGATTGGGAAAAAATTCGTGGTGCTAAGATCGCTACGATTTTCCAAGATCCCATGACTAG
TTTGGATCCAATCAATACAATAGGAAGCCAAATTACTGAAGTTATTATCAAACACCAAGGCAAAGATGCAAAAGAAGCCA
AAGAAATGGCAATCGACTATATGAAAAAAGTTGGAATACCTGATGCAGAACGTCGGTTTGAAGAGTATCCTTTCCAATAT
TCTGGAGGAATGCGTCAACGGATTGTTATCGCTATTGCTCTTGCTTGTCGTCCAGATATTCTAATTTGTGATGAGCCAAC
TACGGCTTTAGATGTGACAATACAAGCACAAATTATCGAACTTTTAAAATCATTGCAGAACGAATACCGCTTTACAACTA
TATTTATCACTCATGACTTGGGTGTTGTTGCTAGCATTGCCGATAAAGTAGCGGTTATGTATGCTGGTGAGATTGTTGAA
TACGGAACGGTTGAAGAAATCTTTTATGATCCACGCCATCCTTATACCTGGAGCTTGCTATCTAGCTTGCCACAGTTGGC
CAATGATCATGGTGAACTCTTCTCTATCCCAGGAACTCCTCCGTCTCTTTATACCGAGTTGAAAGGTGATGCCTTTGCTC
TTCGTTCGGATTACGCTATGCAAATTGATTTCGAAGAAAAAGCACCACAATTCCAAGTCACAGAAACTCACTGGGCTAAA
ACTTGGTTGCTTCATGAAGATGCACCAAAGGTTCACAAGCCTGAAATTATTGAAAATTTACATGATAAAATTCGCTTGAA
TATGGGCTTTGCTCATTTAGAAGGCTAG

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(239-301)

ABC transporter (ABC_tran)

(29-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0F2CNN2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

87.252

99.437

0.868
  amiE Streptococcus thermophilus LMG 18311

85.552

99.437

0.851
  amiE Streptococcus thermophilus LMD-9

85.552

99.437

0.851
  oppD Streptococcus mutans UA159

54.155

98.31

0.532

Multiple sequence alignment