Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   CO687_RS05170 Genome accession   NZ_CP023511
Coordinates   1046075..1048057 (+) Length   660 a.a.
NCBI ID   WP_053794410.1    Uniprot ID   -
Organism   Streptococcus gordonii strain FDAARGOS_371     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1041075..1053057
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CO687_RS05160 (CO687_05160) amiA 1041689..1043650 (+) 1962 WP_096755017.1 peptide ABC transporter substrate-binding protein Regulator
  CO687_RS05165 (CO687_05165) amiA3 1043867..1045825 (+) 1959 WP_096755018.1 peptide ABC transporter substrate-binding protein Regulator
  CO687_RS05170 (CO687_05170) amiA 1046075..1048057 (+) 1983 WP_053794410.1 peptide ABC transporter substrate-binding protein Regulator
  CO687_RS05175 (CO687_05175) amiA 1048335..1050335 (+) 2001 WP_096755019.1 peptide ABC transporter substrate-binding protein Regulator
  CO687_RS05180 (CO687_05180) amiC 1050400..1051896 (+) 1497 WP_048777855.1 ABC transporter permease Regulator
  CO687_RS05185 (CO687_05185) amiD 1051896..1052822 (+) 927 WP_045634045.1 oligopeptide ABC transporter permease OppC Regulator

Sequence

Protein


Download         Length: 660 a.a.        Molecular weight: 73494.90 Da        Isoelectric Point: 5.0817

>NTDB_id=247972 CO687_RS05170 WP_053794410.1 1046075..1048057(+) (amiA) [Streptococcus gordonii strain FDAARGOS_371]
MKKRNVLAMAGVTILAAGVLAACSSSKSGSSNTNTNFTYVYQTDPETLDYTLSSKTSTHEITSNVIDGLLENDQYGNLVP
SLAEDWSVSKDGLTYTYKLRKGVKWYTSDGEEYADVTAKDFVTGLKHAVDKKSEALYMVENSIKGLDAYIKGETKDFSTV
GIKAVDDHTLQFTLEHPESFWNSKLTMGVLFPVNEEFLKSKGDKFGQATDPTSILYNGPFLLKGITSKSSIEFAKNQNYW
DKDNVHVDNVKLAFYDGQDQESLIRGFKDGSYSKARVYPRSSNYASVEKEYKDNIIFSPQGSSTFTVFTNIDRQSYNHTS
KTTDAQKTSTKKAILNKDFRQALNFAYDRKAYSDQVNGEEGALKSIRNLYVPPTFVQVGDKNFGDVVKEDVVKYGDEWKD
VDFSDATNGLYNPEKAKAEFAKAKEALQAEGVEFPIHLDIPTIQTNTLIVKRAQSLKQSIEKSLGTDNVVVDIQMLSQED
VNNITYYAPNAAALDWDITDQLGWTPDFQDPSSYLEILHPETGDNTKSFLGFEAGSGNAAAKQIGMDEFGKLLDEAAAEK
TDTTKRYEKYAAAQAWLTDSSILIPSTSNGGGAGVTRVVPFTAAFGWTGNKSDGAFLYKYIKLQDKPVTKKEYQEAEKKW
IKEKEESNKKAQEELEKHIK

Nucleotide


Download         Length: 1983 bp        

>NTDB_id=247972 CO687_RS05170 WP_053794410.1 1046075..1048057(+) (amiA) [Streptococcus gordonii strain FDAARGOS_371]
ATGAAGAAACGCAATGTTTTAGCCATGGCTGGTGTAACCATACTTGCTGCTGGTGTCTTAGCTGCCTGCTCTAGTTCTAA
GTCTGGATCATCAAACACAAATACTAATTTTACTTATGTTTATCAAACAGACCCAGAAACTTTGGACTATACCTTATCAA
GTAAGACCTCTACCCATGAAATCACATCTAATGTCATTGATGGTTTGCTTGAAAATGACCAATATGGTAATCTTGTTCCA
TCACTTGCAGAAGACTGGAGTGTATCTAAGGACGGCCTGACTTACACTTACAAATTGCGTAAGGGAGTTAAATGGTATAC
ATCCGATGGCGAAGAATATGCAGATGTAACTGCTAAGGATTTTGTGACAGGTTTGAAACATGCTGTAGATAAAAAATCAG
AAGCTCTTTATATGGTGGAAAATTCCATCAAAGGATTGGATGCCTATATCAAAGGGGAAACAAAGGACTTCTCAACAGTA
GGGATTAAAGCTGTCGATGATCATACCTTGCAGTTCACTTTGGAACACCCAGAAAGCTTCTGGAATTCTAAATTAACAAT
GGGTGTCCTATTCCCTGTTAATGAAGAGTTCTTGAAATCTAAAGGAGACAAATTCGGTCAAGCTACTGACCCGACAAGTA
TCCTTTATAATGGTCCTTTCTTGTTGAAAGGTATAACTTCGAAGTCCTCTATCGAGTTTGCGAAAAATCAGAACTATTGG
GATAAAGACAATGTTCATGTAGACAATGTTAAATTAGCTTTCTATGATGGGCAAGACCAAGAATCCTTAATTCGTGGCTT
TAAAGACGGCTCTTATAGTAAGGCACGTGTTTATCCTCGTAGTTCAAACTATGCGTCTGTAGAGAAAGAATATAAAGACA
ATATCATCTTTAGTCCTCAAGGTTCATCTACTTTCACTGTTTTCACAAACATTGATCGCCAAAGTTATAATCATACTTCT
AAAACGACAGATGCACAAAAAACATCTACCAAAAAAGCTATCTTAAACAAAGACTTCCGTCAGGCTTTGAACTTTGCTTA
TGACCGTAAGGCCTATTCTGACCAAGTGAACGGTGAAGAAGGAGCCCTTAAATCTATTCGTAACCTCTATGTCCCACCAA
CATTTGTTCAAGTTGGTGACAAGAATTTTGGAGATGTCGTAAAAGAAGATGTTGTCAAATACGGCGATGAGTGGAAAGAT
GTTGATTTCTCAGATGCGACTAACGGTCTCTACAATCCAGAGAAAGCCAAAGCGGAATTCGCCAAAGCAAAAGAAGCCCT
TCAAGCAGAAGGCGTGGAATTCCCAATTCATCTGGACATACCAACAATCCAGACCAATACTCTTATTGTAAAACGGGCTC
AATCTTTGAAACAGTCTATTGAAAAGAGTTTAGGAACAGACAATGTTGTGGTTGATATTCAAATGTTATCCCAAGAAGAT
GTTAATAATATAACTTACTATGCTCCAAATGCAGCTGCTTTGGATTGGGATATCACAGACCAACTTGGCTGGACTCCTGA
CTTCCAAGATCCGTCATCCTACTTAGAGATTCTACATCCAGAAACAGGTGATAACACGAAGTCTTTCCTTGGATTTGAAG
CTGGTAGTGGAAATGCTGCTGCTAAACAAATCGGCATGGATGAATTTGGAAAATTGTTGGATGAAGCTGCTGCTGAAAAG
ACAGATACAACAAAACGCTATGAAAAATATGCAGCTGCTCAAGCTTGGTTGACAGATAGTTCGATCTTGATTCCAAGCAC
TTCAAATGGTGGAGGAGCTGGTGTAACTAGGGTTGTGCCATTCACTGCTGCTTTTGGTTGGACAGGTAACAAATCAGATG
GTGCCTTCCTCTACAAATACATCAAGCTTCAAGATAAACCAGTAACGAAGAAAGAGTATCAAGAAGCTGAGAAGAAATGG
ATTAAAGAAAAAGAAGAATCTAACAAAAAAGCTCAAGAAGAACTTGAGAAGCATATAAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(78-523)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

60.666

100

0.608
  amiA3 Streptococcus thermophilus LMD-9

59.758

100

0.598
  amiA3 Streptococcus thermophilus LMG 18311

59.607

100

0.597

Multiple sequence alignment