Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   CO687_RS05165 Genome accession   NZ_CP023511
Coordinates   1043867..1045825 (+) Length   652 a.a.
NCBI ID   WP_096755018.1    Uniprot ID   -
Organism   Streptococcus gordonii strain FDAARGOS_371     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1038867..1050825
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CO687_RS05155 (CO687_05155) pbp3 1040158..1041396 (-) 1239 WP_096755016.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  CO687_RS05160 (CO687_05160) amiA 1041689..1043650 (+) 1962 WP_096755017.1 peptide ABC transporter substrate-binding protein Regulator
  CO687_RS05165 (CO687_05165) amiA3 1043867..1045825 (+) 1959 WP_096755018.1 peptide ABC transporter substrate-binding protein Regulator
  CO687_RS05170 (CO687_05170) amiA 1046075..1048057 (+) 1983 WP_053794410.1 peptide ABC transporter substrate-binding protein Regulator
  CO687_RS05175 (CO687_05175) amiA 1048335..1050335 (+) 2001 WP_096755019.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 652 a.a.        Molecular weight: 72213.02 Da        Isoelectric Point: 5.0922

>NTDB_id=247971 CO687_RS05165 WP_096755018.1 1043867..1045825(+) (amiA3) [Streptococcus gordonii strain FDAARGOS_371]
MNKKKRFVGVGLAVLSSVILAACSSTASNTKVYSYVYSNDPDSLDYVVANRATTSDVTGNLIDGLLENDKYGNLIPSLAE
DWTVSKDGLTYTYKLRKGAKWYTSDGEEYAEVKAQDFVTGLKHAADGKSEALYLVQNSIKGLDAYIKGETKDFSTVGVKA
LDDYTVQYTLNKPESYWNSKTTSGILFPINADFLASQGSGFGSAKPSSILYNGPYILKSLTAKSSIEYKKNEKYWDKENV
PIEDVKLSYYDGSDQESLVRNFSDGAYTLARVFPNSSNYASVKKKYADNITYSQQGGTSFFYVFNVNRQSYNHTSKKDDK
QKSDTKAAILNKDFRQAIGFAFDRKAYAAQTNGEDGASMILRNLAVPPTFVQIKDRNFGDVVKEKLASYGQEWSDVKLED
AQDGLYNAEKAKAEFAKAKETLQAQGVNFPIHLDLPVSQSDKAGIQQASSFKQSVESALGKDNVVVDLQQMSEDDFNNTG
YFANSAAQKDYDLSTSGWTPDYQDPSTYLDVFDPTNGGLLQAIGIEPGQNQDVVSALGLNDYKALNDDANKETSDTSVRY
EKYANSQAWLTDSGLTLPSISNGANPLVQKSVPFTRAYSWIGSKGTATNYKYMQLQDDVLTSKDYEKAFKTWMKEKESSN
EKAQKELEKHVK

Nucleotide


Download         Length: 1959 bp        

>NTDB_id=247971 CO687_RS05165 WP_096755018.1 1043867..1045825(+) (amiA3) [Streptococcus gordonii strain FDAARGOS_371]
ATGAATAAGAAAAAAAGATTTGTTGGAGTTGGACTTGCAGTTTTATCTTCTGTGATTTTAGCTGCTTGTAGTTCAACAGC
ATCTAATACAAAGGTGTATTCTTATGTATATAGTAATGATCCAGATTCTTTGGACTATGTAGTTGCTAATCGTGCTACCA
CTTCAGATGTGACTGGAAATCTGATTGATGGTTTGCTTGAAAATGATAAGTATGGGAATTTGATTCCGTCTCTTGCTGAA
GATTGGACCGTATCTAAGGATGGTTTGACTTATACTTACAAGCTTCGTAAAGGTGCTAAGTGGTATACTTCAGATGGAGA
AGAGTATGCTGAAGTAAAAGCTCAAGATTTTGTGACAGGATTGAAGCACGCAGCCGATGGCAAATCCGAAGCTCTTTACC
TTGTTCAAAATTCTATCAAAGGATTGGATGCCTATATCAAAGGGGAAACCAAAGACTTTTCTACTGTAGGTGTAAAAGCA
CTGGATGATTATACAGTGCAGTATACTTTGAATAAGCCAGAAAGTTACTGGAATTCGAAGACGACTAGTGGTATCTTATT
CCCGATAAATGCTGATTTCTTAGCTTCCCAAGGAAGTGGTTTTGGATCAGCTAAACCGTCTAGTATTTTATACAATGGTC
CTTATATTTTGAAGTCTTTAACGGCAAAGTCTTCTATTGAATATAAGAAAAACGAAAAATATTGGGATAAAGAAAATGTT
CCTATTGAAGATGTAAAACTATCTTATTATGATGGATCCGATCAAGAATCCTTAGTTCGTAATTTTAGCGATGGTGCTTA
TACCCTGGCTCGTGTATTCCCAAATAGTTCGAACTATGCTTCTGTTAAAAAGAAATATGCGGATAATATTACCTATTCTC
AACAAGGTGGAACTTCATTTTTCTATGTCTTTAATGTAAATCGTCAGTCTTATAATCATACTTCTAAGAAAGATGACAAG
CAAAAATCAGATACCAAGGCTGCTATTTTAAACAAAGATTTCCGTCAGGCAATCGGTTTTGCTTTTGACCGAAAAGCTTA
CGCAGCTCAAACGAATGGTGAAGACGGAGCATCAATGATCTTGCGCAATCTTGCAGTGCCGCCGACATTTGTGCAGATTA
AGGATCGGAATTTTGGAGATGTCGTGAAAGAAAAACTAGCGAGCTACGGCCAAGAGTGGTCTGATGTCAAGTTAGAGGAT
GCCCAAGACGGTCTATATAATGCTGAAAAAGCTAAAGCAGAGTTTGCAAAAGCAAAAGAAACCCTGCAGGCTCAAGGTGT
AAATTTCCCGATTCATCTAGATTTGCCAGTAAGTCAGTCTGATAAGGCCGGAATCCAACAAGCTAGTTCCTTTAAACAGT
CTGTTGAGTCAGCACTTGGAAAGGACAATGTAGTAGTTGATCTCCAGCAGATGTCCGAAGATGACTTTAATAATACGGGT
TATTTCGCCAACTCGGCTGCTCAAAAAGATTATGATCTTTCAACCAGTGGTTGGACTCCTGATTATCAAGATCCTTCTAC
ATATTTAGATGTTTTTGATCCGACAAATGGTGGATTGCTACAAGCGATTGGAATTGAACCGGGTCAAAATCAAGATGTTG
TGTCAGCTCTAGGATTAAATGATTATAAAGCTCTGAATGATGATGCAAATAAGGAAACGTCTGATACGAGTGTGCGTTAT
GAAAAATATGCAAATTCTCAAGCATGGTTGACAGATAGTGGTTTGACCCTTCCAAGTATCTCAAACGGTGCTAATCCGCT
GGTTCAAAAATCAGTTCCATTTACTAGAGCCTACTCTTGGATTGGAAGTAAGGGGACAGCTACAAATTATAAATACATGC
AACTTCAAGACGATGTCTTGACTTCTAAGGATTATGAGAAGGCATTTAAAACTTGGATGAAAGAAAAAGAATCATCTAAT
GAAAAAGCTCAAAAAGAGTTAGAAAAACATGTAAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(74-513)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

58.6

100

0.59
  amiA Streptococcus salivarius strain HSISS4

58.689

100

0.59
  amiA3 Streptococcus thermophilus LMG 18311

58.295

100

0.587

Multiple sequence alignment