Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   CO687_RS05160 Genome accession   NZ_CP023511
Coordinates   1041689..1043650 (+) Length   653 a.a.
NCBI ID   WP_096755017.1    Uniprot ID   -
Organism   Streptococcus gordonii strain FDAARGOS_371     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1036689..1048650
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CO687_RS05145 (CO687_05145) sufU 1037880..1038317 (+) 438 WP_008809631.1 Fe-S cluster assembly sulfur transfer protein SufU -
  CO687_RS05150 (CO687_05150) sufB 1038335..1039747 (+) 1413 WP_008809630.1 Fe-S cluster assembly protein SufB -
  CO687_RS05155 (CO687_05155) pbp3 1040158..1041396 (-) 1239 WP_096755016.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  CO687_RS05160 (CO687_05160) amiA 1041689..1043650 (+) 1962 WP_096755017.1 peptide ABC transporter substrate-binding protein Regulator
  CO687_RS05165 (CO687_05165) amiA3 1043867..1045825 (+) 1959 WP_096755018.1 peptide ABC transporter substrate-binding protein Regulator
  CO687_RS05170 (CO687_05170) amiA 1046075..1048057 (+) 1983 WP_053794410.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 653 a.a.        Molecular weight: 72683.89 Da        Isoelectric Point: 4.9834

>NTDB_id=247970 CO687_RS05160 WP_096755017.1 1041689..1043650(+) (amiA) [Streptococcus gordonii strain FDAARGOS_371]
MKPVKKLAVLGLTLASVFTLAACGNSNSGASKTYSYVYSTDPDTLDYTNSNRQTTSDVIANLVDGLLENDRYGNLVPSLA
EDWTVSKDGLTYTYKLRKGAKWYTSEGEEYAEVKAQDFVTGLKHAADSNSDALPIVQSSIKGLDAYVKGESKDFSTVGVK
AIDDYTVQYTLNKPESYWNSKTTMGILFPINEEFLKSSGKDFGTVKPSGILYNGPYFLKSFTSKSSIEYTKNDNYWDKGN
VKISDVKLTYFDGSDQEALVRNFKDGTYTQARLYPNSSSYASVQKQYKDNIVYSPQDATSFFYAFNYNRKAYNFTAKTTD
AQKTSTTAALLNKDFRQAINFAFNRTAYGAQQNGQEGATSSLRNSLVPPTFVQIGEKNFGDIVEKDLVSYGDEWKGVKLD
DAQDGLFNVEKAKAEFAKAKEALQAQGVEFPIHLDLPVEQTNNLLVQQANSFKQSVEEALGKDNVVIDVQQMSTENKNNV
TYFAETAAQKDYDINIAGWGPDFQDPSTYLNIFDPDKGDMLQNIGLEKGQNADLADKLGLNEFKKLNEEADSEKQDTTAR
YTKYAAAQAWLTDSSLVIPIQSNGGNPLVMKAVPFTKPYSLVGIKGDVYVFKYREVQNDIVTAKDYKAAEKKWKKEKEKS
NAKAQEELADHVK

Nucleotide


Download         Length: 1962 bp        

>NTDB_id=247970 CO687_RS05160 WP_096755017.1 1041689..1043650(+) (amiA) [Streptococcus gordonii strain FDAARGOS_371]
ATGAAACCAGTGAAAAAATTAGCTGTTTTAGGGCTTACGCTTGCTTCTGTTTTTACTTTAGCGGCATGTGGAAATTCTAA
CTCAGGGGCTTCAAAGACTTATTCTTATGTCTATTCAACAGACCCAGATACCTTGGATTATACAAATTCTAATCGTCAAA
CTACGTCTGATGTTATTGCAAACTTAGTGGATGGACTATTAGAAAATGATAGATACGGAAATCTTGTGCCATCTCTAGCA
GAAGATTGGACGGTATCAAAAGATGGTTTGACTTATACATATAAGCTCCGGAAGGGTGCTAAATGGTACACTTCTGAGGG
TGAAGAATATGCAGAAGTCAAAGCACAGGACTTTGTTACTGGATTGAAGCATGCAGCTGACAGCAATTCAGATGCGCTTC
CAATTGTTCAAAGCTCTATCAAAGGTTTGGATGCTTATGTAAAAGGTGAAAGTAAGGATTTCTCAACAGTTGGAGTTAAG
GCGATTGACGATTATACAGTCCAATATACACTCAACAAGCCAGAAAGTTATTGGAATTCTAAAACCACAATGGGTATTCT
TTTCCCAATTAACGAAGAATTTTTAAAATCATCTGGTAAAGATTTCGGTACTGTAAAACCTTCAGGAATTCTCTATAACG
GTCCATATTTCCTGAAGTCCTTCACATCTAAATCATCTATTGAATATACAAAAAATGACAACTATTGGGATAAGGGCAAC
GTGAAAATTTCAGACGTCAAGTTGACTTACTTTGATGGTTCTGATCAAGAGGCGCTTGTTCGTAACTTTAAAGATGGTAC
ATACACACAAGCTCGTTTGTATCCAAATAGTTCAAGTTATGCTTCAGTGCAAAAACAATACAAAGACAATATTGTATACT
CTCCTCAAGATGCAACATCATTCTTTTACGCCTTTAACTACAACCGTAAAGCCTACAATTTTACAGCCAAGACAACAGAT
GCTCAAAAGACATCTACAACGGCTGCTCTCTTAAATAAAGATTTCCGTCAGGCAATCAACTTCGCTTTCAATCGGACGGC
TTATGGAGCGCAGCAAAACGGTCAAGAGGGAGCAACTAGCTCACTTAGAAATAGCTTAGTACCGCCAACATTCGTTCAGA
TTGGTGAAAAGAACTTCGGAGACATAGTTGAAAAAGATTTGGTGAGCTATGGTGATGAGTGGAAGGGTGTTAAGTTGGAC
GATGCTCAGGATGGACTCTTTAATGTTGAGAAAGCTAAGGCAGAATTTGCCAAAGCAAAAGAAGCTCTCCAAGCACAAGG
TGTTGAATTCCCAATTCACTTAGATCTTCCTGTTGAACAAACAAACAACCTCTTGGTACAGCAGGCTAATTCATTTAAAC
AATCAGTTGAAGAAGCCCTTGGTAAAGATAATGTTGTTATTGATGTACAGCAAATGTCTACAGAAAATAAAAATAATGTA
ACGTACTTTGCGGAGACTGCGGCTCAAAAAGACTACGATATCAACATTGCTGGTTGGGGTCCTGACTTCCAAGATCCATC
AACTTATTTGAATATTTTTGATCCAGATAAAGGAGATATGCTCCAAAATATCGGTTTGGAAAAAGGACAAAATGCTGATT
TAGCAGACAAACTGGGCTTGAACGAATTTAAGAAATTAAATGAAGAGGCAGATTCTGAAAAACAAGATACAACTGCTCGC
TATACAAAATATGCAGCAGCTCAAGCTTGGTTAACAGATAGCTCTTTGGTCATTCCGATTCAATCAAACGGTGGTAATCC
GCTTGTTATGAAGGCAGTTCCGTTCACAAAACCTTACTCTCTGGTTGGTATCAAAGGTGATGTTTACGTCTTTAAGTACA
GAGAAGTTCAAAATGACATTGTAACGGCGAAAGACTACAAAGCCGCTGAGAAAAAATGGAAGAAAGAAAAAGAAAAATCA
AATGCCAAAGCTCAAGAAGAATTGGCTGATCATGTTAAATAG

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(75-516)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

57.534

100

0.579
  amiA3 Streptococcus thermophilus LMD-9

56.449

100

0.57
  amiA3 Streptococcus thermophilus LMG 18311

56.297

100

0.568

Multiple sequence alignment