Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   PSHA_RS01890 Genome accession   NC_007481
Coordinates   396727..397953 (-) Length   408 a.a.
NCBI ID   WP_011327092.1    Uniprot ID   -
Organism   Pseudoalteromonas translucida     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 391727..402953
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSHA_RS01865 (PSHAa0376) - 392345..392830 (+) 486 WP_011327087.1 Spy/CpxP family protein refolding chaperone -
  PSHA_RS01870 (PSHAa0377) yacG 392989..393219 (-) 231 WP_011327088.1 DNA gyrase inhibitor YacG -
  PSHA_RS01875 (PSHAa0378) pilB 393375..395048 (-) 1674 WP_011327089.1 type IV-A pilus assembly ATPase PilB Machinery gene
  PSHA_RS01880 (PSHAa0379) coaE 395169..395801 (-) 633 WP_011327090.1 dephospho-CoA kinase -
  PSHA_RS01885 (PSHAa0380) pilD 395803..396699 (-) 897 WP_041454328.1 A24 family peptidase Machinery gene
  PSHA_RS01890 (PSHAa0381) pilC 396727..397953 (-) 1227 WP_011327092.1 type II secretion system F family protein Machinery gene
  PSHA_RS01895 (PSHAa0382) - 398078..398689 (+) 612 WP_011327093.1 hypothetical protein -
  PSHA_RS01900 (PSHAa0383) - 398670..399101 (-) 432 WP_041454329.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  PSHA_RS01905 (PSHAa0384) - 399118..399549 (-) 432 WP_011327095.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  PSHA_RS01910 (PSHAa0386) nadC 400100..400945 (-) 846 WP_011327097.1 carboxylating nicotinate-nucleotide diphosphorylase -
  PSHA_RS01915 (PSHAa0388) ampD 401490..402044 (+) 555 WP_011327099.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  PSHA_RS01920 (PSHAa0389) ampE 402058..402909 (+) 852 WP_011327100.1 beta-lactamase regulator AmpE -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44517.61 Da        Isoelectric Point: 9.7960

>NTDB_id=24788 PSHA_RS01890 WP_011327092.1 396727..397953(-) (pilC) [Pseudoalteromonas translucida]
MAKQQEKKGQDTFEWVGVSTRGKRLEGELTGSSVALVKAQLRKQGITPSKVKRKAKPLFGARLQKITPKDIAIVTRQIAT
MLMAGVPLIQSIEMIGTGATNKSLGKLMETIADEVKAGQPLSQALRRHPRYFDDLYCDLVASGEQSGALDKIFDRVAIYK
EKSEALKSKIKKAMFYPIAVLVIALIVTSILLIFVVPQFQDIFAGFGAELPAFTLFVISISEFMQAYWWIILIIMFAFGW
AFKEAHLKSLKLRDATDRAILKLPVIGMILNKAAVARYARTLSTTFAAGVPLVDALDSAAGASGNAVYRYAILEIKAEVS
SGNQMNWAMRNSKIFPDMVIQMVAIGEESGSLDGMLGKVATIYEQEVDDAVDGLSSLLEPMIMAVLGVLVGGLIIAMYLP
IFQLGSVI

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=24788 PSHA_RS01890 WP_011327092.1 396727..397953(-) (pilC) [Pseudoalteromonas translucida]
ATGGCTAAACAACAAGAAAAAAAAGGGCAAGATACCTTTGAGTGGGTAGGCGTTAGCACTCGCGGGAAACGCTTAGAAGG
TGAGCTTACTGGTTCTAGTGTTGCGTTAGTAAAAGCCCAACTGCGTAAACAGGGTATTACCCCCTCAAAAGTAAAGCGTA
AAGCCAAGCCGTTATTTGGTGCACGCTTACAAAAAATCACCCCTAAAGATATTGCCATAGTCACTCGGCAAATTGCCACC
ATGCTTATGGCAGGTGTACCGCTAATACAGTCAATTGAAATGATTGGTACCGGAGCGACTAATAAAAGCCTTGGTAAACT
CATGGAAACCATTGCTGATGAAGTAAAGGCTGGCCAACCGTTATCGCAAGCACTGCGACGCCACCCCCGTTATTTTGATG
ATTTATATTGCGATTTAGTGGCATCGGGTGAACAATCTGGCGCTTTAGATAAAATATTCGACCGCGTGGCTATTTATAAA
GAAAAGTCTGAAGCGCTTAAATCAAAAATTAAAAAGGCGATGTTTTATCCTATTGCGGTATTAGTTATCGCACTTATAGT
TACCTCAATACTACTAATATTTGTAGTACCGCAATTTCAGGATATTTTTGCCGGCTTTGGCGCTGAACTCCCTGCTTTCA
CCTTATTTGTAATTAGCATATCGGAATTTATGCAGGCGTATTGGTGGATAATACTTATAATAATGTTTGCCTTTGGTTGG
GCGTTTAAAGAAGCGCACCTTAAAAGCTTAAAGCTGCGCGATGCTACCGACCGAGCCATATTAAAGTTGCCAGTTATTGG
TATGATTTTAAATAAAGCCGCCGTTGCGCGTTATGCCCGTACGCTCTCTACCACCTTTGCTGCTGGTGTACCGCTAGTTG
ATGCGCTGGATTCTGCCGCAGGCGCCTCGGGTAATGCGGTTTATCGTTATGCTATTTTAGAAATAAAAGCCGAAGTTAGC
TCGGGTAACCAAATGAACTGGGCAATGCGTAACTCTAAAATATTCCCTGATATGGTAATACAAATGGTGGCTATTGGTGA
AGAGTCAGGCTCGCTCGATGGCATGCTAGGTAAGGTAGCGACTATTTATGAGCAAGAAGTTGATGATGCAGTAGATGGAC
TATCAAGCCTATTAGAGCCGATGATTATGGCAGTACTAGGCGTGCTAGTAGGTGGTTTAATTATTGCCATGTACTTACCT
ATATTCCAACTTGGCTCTGTTATTTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)

Type II secretion system (T2SS), protein F (T2SSF)

(75-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

63.384

97.059

0.615
  pilC Acinetobacter baumannii D1279779

55.556

99.265

0.551
  pilC Legionella pneumophila strain ERS1305867

55.668

97.304

0.542
  pilC Acinetobacter baylyi ADP1

55.164

97.304

0.537
  pilC Vibrio cholerae strain A1552

44.862

97.794

0.439
  pilG Neisseria meningitidis 44/76-A

43.003

96.324

0.414
  pilG Neisseria gonorrhoeae MS11

42.748

96.324

0.412
  pilC Vibrio campbellii strain DS40M4

42.065

97.304

0.409

Multiple sequence alignment