Detailed information NTG0024787

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: PSHA_RS01885
• Genome accession: NC_007481
• Coordinates: 395803..396699 (-)
• Length: 298 a.a.
• NCBI ID: WP_041454328.1
• Uniprot ID: -
• Organism: Pseudoalteromonas translucida
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 390803..401699

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PSHA_RS01860 (PSHAa0375)	-	391491..392180 (-)	690	WP_011327086.1	response regulator transcription factor	-
PSHA_RS01865 (PSHAa0376)	-	392345..392830 (+)	486	WP_011327087.1	Spy/CpxP family protein refolding chaperone	-
PSHA_RS01870 (PSHAa0377)	yacG	392989..393219 (-)	231	WP_011327088.1	DNA gyrase inhibitor YacG	-
PSHA_RS01875 (PSHAa0378)	pilB	393375..395048 (-)	1674	WP_011327089.1	type IV-A pilus assembly ATPase PilB	Machinery gene
PSHA_RS01880 (PSHAa0379)	coaE	395169..395801 (-)	633	WP_011327090.1	dephospho-CoA kinase	-
PSHA_RS01885 (PSHAa0380)	pilD	395803..396699 (-)	897	WP_041454328.1	A24 family peptidase	Machinery gene
PSHA_RS01890 (PSHAa0381)	pilC	396727..397953 (-)	1227	WP_011327092.1	type II secretion system F family protein	Machinery gene
PSHA_RS01895 (PSHAa0382)	-	398078..398689 (+)	612	WP_011327093.1	hypothetical protein	-
PSHA_RS01900 (PSHAa0383)	-	398670..399101 (-)	432	WP_041454329.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
PSHA_RS01905 (PSHAa0384)	-	399118..399549 (-)	432	WP_011327095.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
PSHA_RS01910 (PSHAa0386)	nadC	400100..400945 (-)	846	WP_011327097.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 298 a.a.
• Molecular weight: 32748.92 Da
• Isoelectric Point: 6.4382

>NTDB_id=24787 PSHA_RS01885 WP_041454328.1 395803..396699(-) (pilD) [Pseudoalteromonas translucida]
MQSIIEVMQSQLWFYLTTIGLVSLCVGSFLNVVIYRLPLMMQHEWQGECRLLLESELKGNKADESESLNSTFNLVKPNST
CPKCKTAIKAWQNIPVVSWLFLKGKCASCSNPISARYPIVEAITALLSLVVAYKLGATEQALLYIAITWALVALTFIDID
HMLLPDQITLPLVWLALIAAVLGYTVTPTDAIIGAACGYLSLWSVFWLFKLLTGKEGMGYGDFKLLAVFGALLGWQSLLT
IILLSSVVGAIIGIALLTIQGKDKATPIPFGPYLAIAGWITMLWGEQLQTSYFNLIGY

Nucleotide

• Length: 897 bp

>NTDB_id=24787 PSHA_RS01885 WP_041454328.1 395803..396699(-) (pilD) [Pseudoalteromonas translucida]
ATGCAAAGTATTATAGAAGTAATGCAAAGCCAATTGTGGTTTTATTTAACCACTATTGGCTTGGTGAGTTTGTGTGTTGG
CAGTTTTTTAAACGTAGTTATTTACCGTTTGCCACTAATGATGCAACACGAATGGCAAGGCGAATGCCGCTTGCTGTTAG
AAAGTGAACTTAAAGGTAATAAAGCAGATGAAAGCGAGTCTTTAAACTCAACTTTTAATTTAGTAAAGCCCAACTCTACC
TGCCCTAAATGTAAAACAGCAATTAAAGCGTGGCAAAATATACCCGTAGTTAGCTGGTTATTTTTAAAAGGTAAATGCGC
CAGTTGTAGTAACCCGATATCGGCTCGCTATCCTATTGTAGAGGCAATAACTGCACTATTAAGCTTAGTGGTTGCGTATA
AGCTGGGCGCTACCGAGCAGGCTTTACTTTATATAGCAATTACTTGGGCTTTAGTGGCACTTACCTTTATTGATATTGAC
CATATGTTACTGCCCGACCAAATTACCCTACCGCTTGTATGGCTGGCACTTATTGCAGCAGTACTGGGCTATACCGTTAC
CCCAACTGATGCCATTATTGGTGCAGCTTGCGGCTATTTAAGTTTGTGGAGCGTATTTTGGTTATTTAAATTACTTACCG
GTAAAGAAGGCATGGGCTATGGCGACTTTAAATTACTTGCCGTATTTGGTGCTTTGCTTGGCTGGCAATCACTATTAACC
ATTATTTTGCTCTCGAGCGTAGTGGGCGCAATTATTGGCATTGCGCTATTAACTATTCAGGGTAAAGACAAAGCCACGCC
CATTCCGTTTGGCCCCTACCTTGCTATTGCAGGCTGGATCACCATGTTATGGGGCGAGCAATTGCAAACTAGCTACTTTA
ATTTAATTGGCTACTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-134)

• Type IV leader peptidase family (Peptidase_A24) (147-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	51.877	98.322	0.51
pilD	Vibrio campbellii strain DS40M4	50.853	98.322	0.5
pilD	Acinetobacter baumannii D1279779	51.027	97.987	0.5
pilD	Acinetobacter nosocomialis M2	50.685	97.987	0.497
pilD	Neisseria gonorrhoeae MS11	46.816	89.597	0.419