Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   CO686_RS00510 Genome accession   NZ_CP023507
Coordinates   89876..91876 (+) Length   666 a.a.
NCBI ID   WP_096753365.1    Uniprot ID   A0AAW7W8D0
Organism   Streptococcus oralis strain FDAARGOS_367     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 84876..96876
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CO686_RS00480 (CO686_00480) - 85446..85676 (+) 231 WP_002892633.1 DUF1146 family protein -
  CO686_RS00485 (CO686_00485) murA 85700..86983 (+) 1284 WP_096753362.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  CO686_RS00490 (CO686_00490) - 86970..87164 (+) 195 WP_000739701.1 DNA-directed RNA polymerase subunit beta -
  CO686_RS00495 (CO686_00495) endA 87205..88029 (+) 825 WP_096753363.1 DNA/RNA non-specific endonuclease Machinery gene
  CO686_RS00500 (CO686_00500) - 88161..89492 (+) 1332 WP_096753364.1 hemolysin family protein -
  CO686_RS00510 (CO686_00510) amiA3 89876..91876 (+) 2001 WP_096753365.1 peptide ABC transporter substrate-binding protein Regulator
  CO686_RS00515 (CO686_00515) amiC 91942..93438 (+) 1497 WP_096753366.1 ABC transporter permease Regulator
  CO686_RS00520 (CO686_00520) amiD 93438..94364 (+) 927 WP_049550072.1 oligopeptide ABC transporter permease OppC Regulator
  CO686_RS00525 (CO686_00525) amiE 94373..95440 (+) 1068 WP_096753367.1 ABC transporter ATP-binding protein Regulator
  CO686_RS00530 (CO686_00530) amiF 95451..96380 (+) 930 WP_001291311.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 666 a.a.        Molecular weight: 73177.58 Da        Isoelectric Point: 4.9979

>NTDB_id=247838 CO686_RS00510 WP_096753365.1 89876..91876(+) (amiA3) [Streptococcus oralis strain FDAARGOS_367]
MKKSRILAVAGVTMLAAGVLAACSNTNSNAGSSNTKLASDYKYVYSVDPETLDYVVNNVDSTSFVTTNAVDGLLANDKYG
NLVPSIAESWTVSQDGLTYTYKIRKDAKWVTAEGEEYAPVKAQDFVTGLKHAVEGKSKGLSVISSSIKGLSAYINGESND
FSTVGVKAVDDNTLEYTLNQPETFWNDKTTNGVMMPINEDFLKSKGEGFGAPTDPSSILYNGPFVLKSITAKSSIEMAKN
DAYWDKDAVKIQNIKFTYWDGKDQDVVAKGFSEGQYSKARIYPTSSTYEKYASEFKDNIFFNEPGSAIATVSVNYGRTTY
NHTSKTTDSQKESTRKALLNKEFRQALNFAVDRNSYSAQTNGTDGAAVAIRNTFSPYDLQVGDKQFGKLVEESLAKTNSS
TWSNVSLADSQNGLYNEEKAKAAFAKAKESLKAEGVEFPIHLDALTIQESTAVVNRVQSLKQSIENVLGADNVVIDLQQM
TQAEALPLSFSAPTAKEQDWDIHTLTGWNPDYQDPSTFLDQFTIKGGNTRLIMGIDKDTDASVIQKLGLSDYEKLLDEAN
KENQDVQKRYEKYALAQAWLTDNGLTIPVMAGPKETAVSFVSKVIPFTSSYSVAGLKGETSGYLKYTEVGEKPLTKEEYQ
KAREKWLKEKAESNEKAQKELASHVK

Nucleotide


Download         Length: 2001 bp        

>NTDB_id=247838 CO686_RS00510 WP_096753365.1 89876..91876(+) (amiA3) [Streptococcus oralis strain FDAARGOS_367]
ATGAAAAAAAGTCGGATTCTTGCAGTAGCAGGTGTAACCATGCTTGCAGCAGGAGTGCTTGCAGCATGTTCAAATACAAA
TTCAAATGCAGGCTCAAGCAATACAAAATTAGCATCAGATTATAAATACGTTTATTCAGTTGATCCTGAAACATTGGATT
ACGTTGTTAACAACGTTGATTCTACTTCTTTTGTGACGACAAATGCGGTAGATGGTTTGCTTGCTAACGATAAATATGGC
AACCTTGTACCATCAATTGCTGAGTCATGGACAGTTTCACAAGACGGTTTGACTTATACTTATAAAATCCGTAAGGATGC
TAAGTGGGTTACTGCTGAAGGAGAAGAATACGCTCCAGTTAAAGCTCAGGATTTTGTCACAGGGTTGAAACATGCGGTAG
AAGGAAAATCAAAAGGGTTGTCTGTTATTAGTTCTTCAATCAAAGGACTTAGTGCTTACATTAACGGTGAATCAAACGAT
TTTTCAACGGTTGGTGTAAAAGCAGTTGACGATAACACTCTTGAATATACATTGAATCAGCCAGAGACTTTCTGGAATGA
CAAAACAACAAATGGCGTGATGATGCCAATCAACGAAGATTTCCTTAAATCAAAAGGGGAAGGCTTTGGTGCACCTACAG
ATCCATCATCTATTTTGTATAATGGACCATTTGTTTTGAAATCAATCACAGCTAAATCATCAATTGAGATGGCTAAGAAC
GATGCTTATTGGGATAAAGACGCTGTTAAAATTCAAAACATTAAATTTACATACTGGGATGGGAAAGACCAAGATGTTGT
TGCCAAAGGATTCTCAGAAGGACAATACAGTAAAGCTCGTATTTATCCTACTAGCTCAACATACGAAAAATATGCGTCTG
AGTTCAAAGATAATATCTTCTTTAACGAACCAGGATCAGCTATCGCTACTGTAAGTGTGAACTATGGTCGTACAACTTAT
AACCATACCTCAAAAACAACAGATAGCCAAAAAGAATCTACAAGAAAAGCTTTGCTAAACAAAGAATTCCGTCAAGCCCT
TAACTTTGCGGTAGACCGTAATTCTTACTCAGCTCAGACAAATGGTACAGATGGTGCTGCAGTTGCAATCCGTAATACTT
TCTCACCATATGATCTTCAAGTTGGGGACAAACAGTTTGGTAAACTTGTAGAAGAAAGTCTTGCGAAGACAAACTCAAGC
ACATGGTCAAACGTATCGCTTGCTGATTCGCAAAATGGTCTCTACAACGAAGAAAAAGCTAAAGCTGCCTTTGCAAAAGC
AAAAGAAAGCTTGAAAGCAGAAGGGGTAGAATTCCCAATTCACTTGGATGCTCTAACAATCCAAGAGTCTACAGCAGTTG
TAAACCGTGTTCAATCACTTAAACAGTCTATTGAAAACGTACTTGGAGCTGACAATGTTGTCATCGATCTTCAACAAATG
ACCCAAGCAGAAGCTTTACCACTTTCATTTAGTGCTCCAACAGCTAAAGAACAAGACTGGGATATTCATACCTTAACTGG
ATGGAATCCTGATTACCAAGATCCATCAACTTTCTTAGACCAGTTCACGATTAAAGGCGGTAATACTCGTTTGATTATGG
GTATCGATAAAGATACTGATGCATCAGTTATCCAAAAACTTGGTTTGTCTGACTATGAAAAATTACTTGATGAAGCAAAC
AAAGAAAATCAAGACGTTCAAAAACGTTATGAAAAATATGCCCTTGCACAAGCTTGGTTAACAGACAACGGTTTGACAAT
TCCTGTAATGGCAGGTCCGAAAGAAACTGCTGTATCATTTGTATCTAAAGTTATTCCATTTACTTCTTCATACTCAGTTG
CGGGTCTTAAAGGAGAAACCTCAGGTTACTTGAAGTACACTGAAGTTGGTGAAAAACCTCTTACAAAAGAAGAATACCAA
AAAGCTCGTGAAAAATGGCTCAAAGAAAAAGCTGAATCAAATGAAAAAGCTCAAAAAGAATTAGCGAGCCACGTGAAATA
A

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(82-528)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

54.491

100

0.547
  amiA3 Streptococcus thermophilus LMG 18311

53.892

100

0.541
  amiA Streptococcus salivarius strain HSISS4

53.743

100

0.539

Multiple sequence alignment