Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   CO686_RS00530 Genome accession   NZ_CP023507
Coordinates   95451..96380 (+) Length   309 a.a.
NCBI ID   WP_001291311.1    Uniprot ID   A0A291D7C0
Organism   Streptococcus oralis strain FDAARGOS_367     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 90451..101380
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CO686_RS00515 (CO686_00515) amiC 91942..93438 (+) 1497 WP_096753366.1 ABC transporter permease Regulator
  CO686_RS00520 (CO686_00520) amiD 93438..94364 (+) 927 WP_049550072.1 oligopeptide ABC transporter permease OppC Regulator
  CO686_RS00525 (CO686_00525) amiE 94373..95440 (+) 1068 WP_096753367.1 ABC transporter ATP-binding protein Regulator
  CO686_RS00530 (CO686_00530) amiF 95451..96380 (+) 930 WP_001291311.1 ATP-binding cassette domain-containing protein Regulator
  CO686_RS00535 (CO686_00535) - 96469..97908 (-) 1440 WP_001043426.1 TrkH family potassium uptake protein -
  CO686_RS00540 (CO686_00540) trkA 97912..99258 (-) 1347 WP_096753368.1 Trk system potassium transporter TrkA -
  CO686_RS00550 (CO686_00550) - 99659..100162 (+) 504 WP_000181365.1 tRNA (cytidine(34)-2'-O)-methyltransferase -
  CO686_RS00555 (CO686_00555) - 100574..101137 (+) 564 WP_096753369.1 ECF transporter S component -

Sequence

Protein


Download         Length: 309 a.a.        Molecular weight: 35053.25 Da        Isoelectric Point: 7.0424

>NTDB_id=247842 CO686_RS00530 WP_001291311.1 95451..96380(+) (amiF) [Streptococcus oralis strain FDAARGOS_367]
MSEKLVEIKDLEISFGEGSKKFVAVKNANFFINKGETFSLVGESGSGKTTIGRAIIGLNNTSKGEIIFDGHKINGKKSHK
ESSDLIRRIQMIFQDPAASLNERATVDYIISEGLYNYHLFKDEEDRKEKVQKMIHEVGLLKEHLTRYPHEFSGGQRQRIG
IARALVMEPDFVIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGVIVEVAETEELFN
NPVHPYTQALLSAVPIPDPILERKKVLKVYDPDQHDYETDKPSMVEIRPGHYVWANQAEVARYKEALKK

Nucleotide


Download         Length: 930 bp        

>NTDB_id=247842 CO686_RS00530 WP_001291311.1 95451..96380(+) (amiF) [Streptococcus oralis strain FDAARGOS_367]
ATGTCTGAAAAATTAGTAGAAATTAAAGATTTAGAAATTTCCTTCGGTGAAGGAAGTAAGAAGTTTGTCGCAGTTAAAAA
CGCTAACTTCTTTATCAACAAGGGAGAAACCTTCTCTCTTGTTGGTGAGTCTGGTAGTGGGAAAACAACCATTGGTCGTG
CCATTATTGGTCTAAATAATACTAGTAAAGGTGAAATCATCTTTGATGGTCATAAAATTAATGGGAAAAAATCTCATAAG
GAATCATCAGACTTGATCCGTCGCATCCAGATGATTTTCCAGGACCCTGCAGCCAGCTTGAATGAGCGTGCAACAGTTGA
CTATATCATCTCTGAAGGTCTTTACAACTATCACTTGTTTAAAGATGAAGAAGATCGAAAAGAAAAAGTTCAAAAGATGA
TTCATGAAGTTGGACTTTTGAAAGAACACTTGACCCGTTACCCACACGAGTTTTCTGGTGGTCAACGCCAGCGTATCGGG
ATTGCCCGTGCTCTTGTGATGGAACCTGATTTCGTTATTGCGGATGAGCCAATTTCAGCCTTGGACGTATCAGTGCGTGC
GCAAGTCTTGAACTTGCTCAAGAAGTTCCAAAAAGAGTTGGGCTTGACCTATCTCTTTATCGCCCATGACTTGTCAGTTG
TTCGCTTTATCTCAGATCGTATCGCGGTTATCTATAAGGGAGTTATCGTCGAAGTGGCGGAGACAGAGGAGTTGTTTAAC
AATCCTGTCCACCCATACACTCAAGCGCTTCTATCTGCTGTACCGATTCCAGATCCAATCTTGGAACGCAAGAAGGTCTT
GAAAGTTTACGATCCTGACCAACATGACTATGAGACAGACAAGCCATCTATGGTAGAAATTCGTCCAGGTCACTATGTTT
GGGCCAATCAAGCAGAAGTTGCTCGATACAAAGAAGCTCTTAAAAAATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(25-178)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A291D7C0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus salivarius strain HSISS4

85.113

100

0.851
  amiF Streptococcus thermophilus LMG 18311

84.142

100

0.841
  amiF Streptococcus thermophilus LMD-9

83.819

100

0.838

Multiple sequence alignment