Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   CO686_RS00515 Genome accession   NZ_CP023507
Coordinates   91942..93438 (+) Length   498 a.a.
NCBI ID   WP_096753366.1    Uniprot ID   A0AAW7W950
Organism   Streptococcus oralis strain FDAARGOS_367     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 86942..98438
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CO686_RS00490 (CO686_00490) - 86970..87164 (+) 195 WP_000739701.1 DNA-directed RNA polymerase subunit beta -
  CO686_RS00495 (CO686_00495) endA 87205..88029 (+) 825 WP_096753363.1 DNA/RNA non-specific endonuclease Machinery gene
  CO686_RS00500 (CO686_00500) - 88161..89492 (+) 1332 WP_096753364.1 hemolysin family protein -
  CO686_RS00510 (CO686_00510) amiA3 89876..91876 (+) 2001 WP_096753365.1 peptide ABC transporter substrate-binding protein Regulator
  CO686_RS00515 (CO686_00515) amiC 91942..93438 (+) 1497 WP_096753366.1 ABC transporter permease Regulator
  CO686_RS00520 (CO686_00520) amiD 93438..94364 (+) 927 WP_049550072.1 oligopeptide ABC transporter permease OppC Regulator
  CO686_RS00525 (CO686_00525) amiE 94373..95440 (+) 1068 WP_096753367.1 ABC transporter ATP-binding protein Regulator
  CO686_RS00530 (CO686_00530) amiF 95451..96380 (+) 930 WP_001291311.1 ATP-binding cassette domain-containing protein Regulator
  CO686_RS00535 (CO686_00535) - 96469..97908 (-) 1440 WP_001043426.1 TrkH family potassium uptake protein -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 55803.17 Da        Isoelectric Point: 9.2160

>NTDB_id=247839 CO686_RS00515 WP_096753366.1 91942..93438(+) (amiC) [Streptococcus oralis strain FDAARGOS_367]
MKKYVFMRVLRSLLSIFLVTTLTYTIIYTMVPRKLIFKQDTNYNKIATTPDKRDNYENTVYERMGYIEYYDTKELQERAS
TMDSSVTVDANDTNKAIYEKYINQLGNGWTLGVFTESGQFYATREIPIFERVFKFYANLLDIDHTNKIQDPENPNLERYL
RFENDPAIGWSLVGSGTKHKYLLYFNSQFPFVHQNFVNLNLGDSYPTYANTPVLQVITQGQGQTKTSEVQFPTGKKTSSV
NIYSRTYKSPSQADAREVANYGKDDPYTATESNYQYPSMITSSAIAGLIGLAISYAIAVPLGSAMARYKNTWIDSFSTGA
LTFLLALPTIALVYIIRLIGSSIGFPDSFPILGAGDWRSYVLPAVILGLLGAPGLAIWIRRYMIDLQSQDFVRFARAKGL
SEKEISNKHIFKNAMVPLVSGIPGSIIGVIGGATLTETVFAFPGMGKMLIDSVKASNNNMVVGLVFIFTCVSIFSYLIGD
IWMTIIDPRIKLTEKGGK

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=247839 CO686_RS00515 WP_096753366.1 91942..93438(+) (amiC) [Streptococcus oralis strain FDAARGOS_367]
ATGAAAAAATATGTTTTTATGCGTGTATTACGTTCATTGTTGTCTATTTTCTTGGTGACAACTTTGACTTACACAATTAT
TTATACGATGGTTCCTCGGAAATTGATTTTCAAGCAGGATACCAACTATAACAAGATTGCAACGACGCCAGATAAACGGG
ACAATTATGAAAATACCGTTTATGAGCGGATGGGCTATATCGAGTACTACGATACCAAAGAGTTGCAAGAAAGAGCTAGC
ACGATGGATTCATCTGTAACAGTAGATGCCAATGATACAAATAAGGCGATCTATGAAAAATACATCAACCAACTAGGAAA
TGGTTGGACGTTGGGTGTATTCACAGAGAGCGGACAATTCTATGCGACTCGTGAAATTCCTATTTTTGAGCGTGTGTTCA
AATTCTATGCAAACTTGCTTGATATTGACCATACAAACAAGATTCAAGATCCAGAAAATCCTAATTTAGAGCGTTATTTG
CGATTTGAAAACGATCCAGCTATTGGATGGTCTTTGGTAGGTTCAGGGACTAAACATAAATACCTCTTGTACTTCAACAG
TCAATTCCCATTTGTTCATCAAAACTTTGTGAACTTAAACTTAGGAGATTCTTATCCAACTTATGCCAATACTCCTGTGC
TTCAAGTTATCACACAAGGACAAGGACAAACCAAGACTTCTGAAGTTCAATTCCCAACTGGTAAGAAAACATCATCAGTC
AATATCTACTCAAGAACTTATAAATCTCCAAGTCAAGCTGATGCGCGTGAAGTAGCGAACTACGGTAAAGATGATCCATA
TACAGCTACTGAAAGCAACTATCAGTATCCATCTATGATTACCAGTTCTGCTATTGCTGGTTTGATTGGCCTTGCAATTT
CGTATGCAATCGCGGTTCCACTTGGTTCTGCAATGGCTCGTTACAAGAATACTTGGATTGATAGTTTCTCTACAGGAGCT
TTAACATTCTTACTTGCTCTTCCAACTATCGCTCTTGTCTATATCATTCGTTTGATTGGTTCTTCAATTGGATTCCCGGA
TTCATTCCCTATCTTGGGTGCTGGAGACTGGCGTTCATATGTACTACCTGCAGTTATTCTTGGTTTACTTGGTGCACCTG
GTTTAGCTATCTGGATTCGCCGTTACATGATTGACTTACAATCACAAGACTTTGTTCGTTTTGCTCGTGCAAAAGGTCTT
TCTGAGAAAGAAATTTCAAACAAACACATCTTTAAAAATGCCATGGTACCGCTTGTTTCAGGTATTCCAGGTTCTATTAT
CGGTGTTATTGGTGGAGCTACTCTTACTGAAACAGTTTTCGCCTTCCCAGGTATGGGTAAAATGTTGATTGACTCTGTAA
AAGCGTCAAATAATAACATGGTAGTTGGTCTAGTTTTCATCTTTACTTGCGTCTCAATCTTCTCTTACTTAATTGGGGAT
ATTTGGATGACAATTATTGACCCACGTATTAAGTTGACAGAGAAAGGAGGCAAATAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(298-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

77.51

100

0.775
  amiC Streptococcus thermophilus LMG 18311

77.309

100

0.773
  amiC Streptococcus thermophilus LMD-9

76.908

100

0.769

Multiple sequence alignment