Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   CO686_RS00520 Genome accession   NZ_CP023507
Coordinates   93438..94364 (+) Length   308 a.a.
NCBI ID   WP_049550072.1    Uniprot ID   -
Organism   Streptococcus oralis strain FDAARGOS_367     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 88438..99364
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CO686_RS00510 (CO686_00510) amiA3 89876..91876 (+) 2001 WP_096753365.1 peptide ABC transporter substrate-binding protein Regulator
  CO686_RS00515 (CO686_00515) amiC 91942..93438 (+) 1497 WP_096753366.1 ABC transporter permease Regulator
  CO686_RS00520 (CO686_00520) amiD 93438..94364 (+) 927 WP_049550072.1 oligopeptide ABC transporter permease OppC Regulator
  CO686_RS00525 (CO686_00525) amiE 94373..95440 (+) 1068 WP_096753367.1 ABC transporter ATP-binding protein Regulator
  CO686_RS00530 (CO686_00530) amiF 95451..96380 (+) 930 WP_001291311.1 ATP-binding cassette domain-containing protein Regulator
  CO686_RS00535 (CO686_00535) - 96469..97908 (-) 1440 WP_001043426.1 TrkH family potassium uptake protein -
  CO686_RS00540 (CO686_00540) trkA 97912..99258 (-) 1347 WP_096753368.1 Trk system potassium transporter TrkA -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34678.57 Da        Isoelectric Point: 9.2755

>NTDB_id=247840 CO686_RS00520 WP_049550072.1 93438..94364(+) (amiD) [Streptococcus oralis strain FDAARGOS_367]
MSTMNNDKFQFVKRDDFASEAIDAPAYSYWGSVFRQFLKKKSTIIMLGILISIVLMSFIYPMFSDFDFNDVSKVNDFSAR
YIKPNAEHWFGTDSNGKSLFDGVWFGARNSILISVIATFINLVIGVIVGGIWGISKSVDRIMMEVYNVINNIPSLLIVIV
LTYSIGAGFWNLIFAMSVTTWIGIAYMIRIQIMRYRDLEYNLASRTLGTPTYKIVIKNIMPQLVSVIVTTTSQMLPAFIS
YEAFLSFFGLGLPITVPSLGRLISDYSQNVTTNAYLFWIPLTTLVLVSLSLFVVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=247840 CO686_RS00520 WP_049550072.1 93438..94364(+) (amiD) [Streptococcus oralis strain FDAARGOS_367]
ATGTCTACAATGAATAATGATAAATTTCAGTTTGTAAAACGCGATGACTTTGCCTCTGAAGCAATTGATGCTCCCGCCTA
CTCATATTGGGGTTCTGTTTTTAGACAATTTTTGAAAAAGAAATCAACTATCATCATGCTTGGTATTTTGATTTCAATCG
TTTTGATGAGTTTCATCTACCCAATGTTCTCAGATTTTGATTTTAACGATGTAAGTAAAGTAAATGATTTTAGTGCTCGT
TATATCAAACCGAATGCCGAACATTGGTTTGGTACAGATAGCAATGGTAAATCCTTGTTTGACGGGGTTTGGTTTGGTGC
GCGTAATTCAATTCTTATCTCTGTAATTGCCACTTTTATCAACCTTGTAATTGGTGTTATTGTCGGGGGTATCTGGGGTA
TTTCAAAATCAGTTGACCGCATCATGATGGAAGTTTACAACGTTATCAATAACATCCCATCACTTTTGATTGTTATTGTT
TTGACTTACTCTATCGGTGCAGGTTTCTGGAATTTGATTTTTGCCATGAGTGTGACTACATGGATTGGTATTGCTTATAT
GATACGTATTCAAATCATGCGTTACCGTGATTTGGAGTACAACCTTGCTTCACGCACACTCGGAACTCCAACATACAAAA
TTGTCATTAAAAATATCATGCCACAATTGGTATCTGTTATTGTTACGACTACATCACAAATGCTTCCAGCCTTTATCTCG
TATGAAGCCTTTCTGTCATTCTTTGGACTTGGATTGCCAATTACAGTACCAAGTTTAGGACGATTGATTTCAGATTATTC
ACAGAACGTAACGACAAATGCATACCTCTTCTGGATTCCATTGACAACTTTGGTCTTGGTATCCTTGTCACTTTTCGTAG
TTGGTCAAAACCTAGCGGATGCTAGTGATCCACGTACACATAGATAG

Domains

Predicted by InterproScan.

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-72)

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(123-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

82.468

100

0.825
  amiD Streptococcus thermophilus LMG 18311

81.494

100

0.815
  amiD Streptococcus thermophilus LMD-9

81.494

100

0.815

Multiple sequence alignment