Detailed information    

insolico Bioinformatically predicted

Overview


Name   amiE   Type   Regulator
Locus tag   CO686_RS00525 Genome accession   NZ_CP023507
Coordinates   94373..95440 (+) Length   355 a.a.
NCBI ID   WP_096753367.1    Uniprot ID   -
Organism   Streptococcus oralis strain FDAARGOS_367     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context


Location: 89373..100440
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CO686_RS00510 (CO686_00510) amiA3 89876..91876 (+) 2001 WP_096753365.1 peptide ABC transporter substrate-binding protein Regulator
  CO686_RS00515 (CO686_00515) amiC 91942..93438 (+) 1497 WP_096753366.1 ABC transporter permease Regulator
  CO686_RS00520 (CO686_00520) amiD 93438..94364 (+) 927 WP_049550072.1 oligopeptide ABC transporter permease OppC Regulator
  CO686_RS00525 (CO686_00525) amiE 94373..95440 (+) 1068 WP_096753367.1 ABC transporter ATP-binding protein Regulator
  CO686_RS00530 (CO686_00530) amiF 95451..96380 (+) 930 WP_001291311.1 ATP-binding cassette domain-containing protein Regulator
  CO686_RS00535 (CO686_00535) - 96469..97908 (-) 1440 WP_001043426.1 TrkH family potassium uptake protein -
  CO686_RS00540 (CO686_00540) trkA 97912..99258 (-) 1347 WP_096753368.1 Trk system potassium transporter TrkA -
  CO686_RS00550 (CO686_00550) - 99659..100162 (+) 504 WP_000181365.1 tRNA (cytidine(34)-2'-O)-methyltransferase -

Sequence


Protein


Download         Length: 355 a.a.        Molecular weight: 39584.25 Da        Isoelectric Point: 4.6490

>NTDB_id=247841 CO686_RS00525 WP_096753367.1 94373..95440(+) (amiE) [Streptococcus oralis strain FDAARGOS_367]
MTKEKNVILTAQDIVVEFDVRDKILTAIRGVSLELIEGEVLALVGESGSGKSVLTKTFTGMLEDNGRIAQGSIDYRGQDL
TALTSNKEWEKIRGAKIATIFQDPMTSLDPINTIGSQITEVIVKHQGKTAKEAKEMAIDYMNKVGIPDAEKRFEEYPFQY
SGGMRQRIVIAIALACRPDILICDEPTTALDVTIQAQIIDLLKTLQNEYHFTIIFITHDLGVVASIADKVAVMYAGEIVE
YGTVEEVFYDPRHPYTWSLLSSLPQLADDKGELYSIPGTPPSLYTELKGDAFALRSDYAMQIDFEQKAPQFSVTDTHWAK
TWLLHENAPKVEKPGVIADLHDKIRDKMGFAHLED

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=247841 CO686_RS00525 WP_096753367.1 94373..95440(+) (amiE) [Streptococcus oralis strain FDAARGOS_367]
ATGACAAAAGAAAAAAATGTAATTTTGACTGCTCAAGATATTGTCGTGGAATTTGATGTTCGTGACAAAATTTTGACAGC
TATTCGTGGAGTATCTCTGGAGTTGATTGAGGGCGAAGTGCTTGCACTCGTTGGAGAATCTGGTTCAGGGAAATCTGTTT
TAACAAAAACCTTTACAGGGATGTTAGAAGACAATGGACGTATTGCCCAAGGAAGCATCGACTATCGTGGACAAGACTTG
ACTGCTCTTACTTCTAACAAGGAATGGGAGAAGATTCGTGGTGCTAAAATTGCGACCATCTTCCAAGACCCAATGACAAG
TTTGGACCCAATCAATACAATCGGTAGTCAAATTACTGAAGTGATCGTTAAACACCAAGGGAAAACAGCTAAGGAAGCCA
AAGAGATGGCAATCGACTATATGAACAAGGTCGGAATTCCAGACGCTGAAAAACGTTTTGAAGAGTATCCTTTCCAATAT
TCTGGAGGGATGCGCCAACGTATCGTTATTGCGATTGCCCTTGCCTGTCGTCCAGATATCTTGATCTGTGACGAGCCAAC
AACGGCTCTTGATGTAACCATTCAAGCGCAAATCATTGATTTGCTTAAAACTTTGCAAAATGAGTACCACTTTACCATTA
TCTTTATCACCCATGACCTTGGTGTGGTAGCAAGTATTGCCGATAAGGTAGCGGTTATGTATGCTGGTGAAATTGTAGAA
TATGGAACTGTTGAGGAAGTTTTCTACGACCCACGTCATCCATATACTTGGAGTCTCTTGTCTAGCTTGCCTCAGCTTGC
TGATGATAAAGGGGAATTGTACTCTATCCCAGGAACACCACCGTCTCTTTATACTGAGTTGAAAGGTGATGCCTTTGCCC
TTCGTTCAGATTATGCGATGCAAATTGACTTTGAACAGAAAGCACCTCAGTTTTCAGTCACGGATACCCACTGGGCTAAG
ACTTGGTTGCTTCATGAGAATGCTCCTAAAGTTGAAAAACCTGGGGTCATTGCAGATTTGCATGACAAGATTCGTGATAA
AATGGGCTTTGCTCATCTAGAAGACTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

85.634

100

0.856

  amiE Streptococcus thermophilus LMG 18311

83.662

100

0.837

  amiE Streptococcus thermophilus LMD-9

83.662

100

0.837

  oppD Streptococcus mutans UA159

54.545

99.155

0.541


Multiple sequence alignment