Detailed information
Bioinformatically predicted
Overview
| Name | comEA | Type | Machinery gene |
| Locus tag | FORC71_RS04835 | Genome accession | NZ_CP023485 |
| Coordinates | 969494..969778 (+) | Length | 94 a.a. |
| NCBI ID | WP_162931983.1 | Uniprot ID | - |
| Organism | Vibrio parahaemolyticus strain FORC_071 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 964494..974778
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FORC71_RS04825 (FORC71_0863) | - | 967012..967284 (+) | 273 | WP_005382341.1 | HU family DNA-binding protein | - |
| FORC71_RS04830 (FORC71_0864) | ppiD | 967484..969343 (+) | 1860 | WP_005495983.1 | peptidylprolyl isomerase | - |
| FORC71_RS04835 (FORC71_0865) | comEA | 969494..969778 (+) | 285 | WP_162931983.1 | ComEA family DNA-binding protein | Machinery gene |
| FORC71_RS04840 (FORC71_0866) | rrtA | 969869..970420 (-) | 552 | WP_162931941.1 | rhombosortase | - |
| FORC71_RS04845 (FORC71_0867) | - | 970424..971038 (+) | 615 | WP_120416554.1 | DTW domain-containing protein | - |
| FORC71_RS04850 (FORC71_0868) | - | 971048..972382 (-) | 1335 | WP_041954079.1 | anti-phage deoxyguanosine triphosphatase | - |
| FORC71_RS04855 (FORC71_0869) | yfbR | 972395..972979 (-) | 585 | WP_005482513.1 | 5'-deoxynucleotidase | - |
| FORC71_RS04860 (FORC71_0870) | - | 973070..974284 (-) | 1215 | WP_005456922.1 | pyridoxal phosphate-dependent aminotransferase | - |
Sequence
Protein
Download Length: 94 a.a. Molecular weight: 10299.97 Da Isoelectric Point: 5.8425
>NTDB_id=247611 FORC71_RS04835 WP_162931983.1 969494..969778(+) (comEA) [Vibrio parahaemolyticus strain FORC_071]
MKWILTLCLVVFAPFSLAADTKADKYEGIEITVNINTASAEEIATMLKGIGEKKAQSIVDYRTEHGLFKTAADLTNVKGI
GEATIKKNEDRILL
MKWILTLCLVVFAPFSLAADTKADKYEGIEITVNINTASAEEIATMLKGIGEKKAQSIVDYRTEHGLFKTAADLTNVKGI
GEATIKKNEDRILL
Nucleotide
Download Length: 285 bp
>NTDB_id=247611 FORC71_RS04835 WP_162931983.1 969494..969778(+) (comEA) [Vibrio parahaemolyticus strain FORC_071]
ATGAAATGGATTTTAACCTTGTGTTTAGTGGTGTTCGCACCATTCAGTTTGGCCGCTGATACCAAGGCTGATAAATATGA
AGGAATTGAAATTACGGTCAATATCAATACTGCTTCTGCAGAAGAGATAGCAACGATGCTGAAAGGTATTGGCGAAAAGA
AAGCGCAAAGCATAGTTGACTACCGTACTGAGCACGGCCTATTTAAAACAGCAGCTGATTTAACCAATGTGAAAGGAATT
GGTGAAGCAACCATCAAGAAAAACGAAGACCGCATTCTTCTATAA
ATGAAATGGATTTTAACCTTGTGTTTAGTGGTGTTCGCACCATTCAGTTTGGCCGCTGATACCAAGGCTGATAAATATGA
AGGAATTGAAATTACGGTCAATATCAATACTGCTTCTGCAGAAGAGATAGCAACGATGCTGAAAGGTATTGGCGAAAAGA
AAGCGCAAAGCATAGTTGACTACCGTACTGAGCACGGCCTATTTAAAACAGCAGCTGATTTAACCAATGTGAAAGGAATT
GGTGAAGCAACCATCAAGAAAAACGAAGACCGCATTCTTCTATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
97.872 |
100 |
0.979 |
| comEA | Vibrio campbellii strain DS40M4 |
76.842 |
100 |
0.777 |
| comEA | Vibrio cholerae C6706 |
61.957 |
97.872 |
0.606 |
| comEA | Vibrio cholerae strain A1552 |
61.957 |
97.872 |
0.606 |
| comE | Neisseria gonorrhoeae MS11 |
40 |
95.745 |
0.383 |
| comE | Neisseria gonorrhoeae MS11 |
40 |
95.745 |
0.383 |
| comE | Neisseria gonorrhoeae MS11 |
40 |
95.745 |
0.383 |
| comE | Neisseria gonorrhoeae MS11 |
40 |
95.745 |
0.383 |
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
56.452 |
65.957 |
0.372 |
| comE1/comEA | Haemophilus influenzae Rd KW20 |
56.452 |
65.957 |
0.372 |
| comEA | Acinetobacter baylyi ADP1 |
47.222 |
76.596 |
0.362 |