Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   COP00_RS13525 Genome accession   NZ_CP023481
Coordinates   2519971..2520312 (-) Length   113 a.a.
NCBI ID   WP_048354075.1    Uniprot ID   A0A0J6E8H0
Organism   Bacillus glycinifermentans strain KBN06P03352     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2514971..2525312
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  COP00_RS13500 (COP00_13500) ureA 2515475..2515792 (+) 318 WP_048354070.1 urease subunit gamma -
  COP00_RS13505 (COP00_13505) ureB 2515789..2516163 (+) 375 WP_048354071.1 urease subunit beta -
  COP00_RS13510 (COP00_13510) ureC 2516160..2517869 (+) 1710 WP_048354072.1 urease subunit alpha -
  COP00_RS13515 (COP00_13515) - 2518070..2518942 (-) 873 WP_048354073.1 Cof-type HAD-IIB family hydrolase -
  COP00_RS13520 (COP00_13520) - 2518970..2519728 (-) 759 WP_048354074.1 DeoR/GlpR family DNA-binding transcription regulator -
  COP00_RS13525 (COP00_13525) ssbB 2519971..2520312 (-) 342 WP_048354075.1 single-stranded DNA-binding protein Machinery gene
  COP00_RS13530 (COP00_13530) - 2520415..2520786 (-) 372 WP_048354076.1 hypothetical protein -
  COP00_RS13535 (COP00_13535) - 2520955..2521368 (+) 414 WP_048354077.1 YwpF-like family protein -
  COP00_RS13540 (COP00_13540) mscL 2521402..2521788 (-) 387 WP_048354078.1 large conductance mechanosensitive channel protein MscL -
  COP00_RS13545 (COP00_13545) fabZ 2521858..2522292 (-) 435 WP_048354079.1 3-hydroxyacyl-ACP dehydratase FabZ -
  COP00_RS13550 (COP00_13550) - 2522477..2523304 (-) 828 WP_048354080.1 flagellar hook-basal body protein -
  COP00_RS13555 (COP00_13555) - 2523333..2524172 (-) 840 WP_048354081.1 flagellar hook-basal body protein -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12627.34 Da        Isoelectric Point: 9.1364

>NTDB_id=247519 COP00_RS13525 WP_048354075.1 2519971..2520312(-) (ssbB) [Bacillus glycinifermentans strain KBN06P03352]
MFNHIMLVGRLTKDPELRYTSDGVPVANITLAVSRHFKNAAGDIETDFINCTLWRKTAENTADYCRKGSIVGLNGRLQTR
NYVNSEGNRVFITEVVARSVHFLGGKPRETADV

Nucleotide


Download         Length: 342 bp        

>NTDB_id=247519 COP00_RS13525 WP_048354075.1 2519971..2520312(-) (ssbB) [Bacillus glycinifermentans strain KBN06P03352]
ATGTTTAACCACATTATGCTGGTCGGGCGTTTAACGAAGGACCCGGAGCTTCGGTATACATCTGACGGTGTCCCCGTTGC
CAATATCACCCTGGCCGTCAGCAGGCATTTCAAAAATGCCGCGGGCGACATTGAGACGGACTTCATCAATTGCACGCTGT
GGAGAAAAACGGCCGAAAACACAGCCGATTACTGCAGAAAAGGTTCAATCGTCGGATTGAACGGCAGGCTTCAAACGCGC
AACTATGTTAATTCAGAAGGGAACCGCGTCTTTATAACAGAAGTCGTCGCCCGCTCCGTTCATTTTTTGGGCGGGAAACC
CCGCGAGACCGCAGATGTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0J6E8H0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

67.568

98.23

0.664
  ssbA Bacillus subtilis subsp. subtilis str. 168

61.321

93.805

0.575
  ssb Latilactobacillus sakei subsp. sakei 23K

57.282

91.15

0.522
  ssbB Lactococcus lactis subsp. cremoris KW2

39.474

100

0.398
  ssb Vibrio cholerae strain A1552

38.596

100

0.389
  ssbA Streptococcus mutans UA159

39.815

95.575

0.381
  ssbB Streptococcus sobrinus strain NIDR 6715-7

39.815

95.575

0.381
  ssbB/cilA Streptococcus mitis NCTC 12261

37.963

95.575

0.363
  ssbB/cilA Streptococcus pneumoniae TIGR4

37.963

95.575

0.363

Multiple sequence alignment