Detailed information NTG0247397

Bioinformatically predicted

Overview

• Name: comYD
• Type: Machinery gene
• Locus tag: CO204_RS01195
• Genome accession: NZ_CP023477
• Coordinates: 230965..231369 (+)
• Length: 134 a.a.
• NCBI ID: WP_002263438.1
• Uniprot ID: -
• Organism: Streptococcus mutans strain LAR01
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 225965..236369

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CO204_RS01175 (CO204_01175)	-	228243..228626 (+)	384	WP_002269807.1	DUF1033 family protein	-
CO204_RS01180 (CO204_01180)	comYA	228756..229697 (+)	942	WP_002264247.1	competence type IV pilus ATPase ComGA	Machinery gene
CO204_RS01185 (CO204_01185)	comYB	229633..230664 (+)	1032	WP_255262721.1	competence type IV pilus assembly protein ComGB	Machinery gene
CO204_RS01190 (CO204_01190)	comYC	230664..230978 (+)	315	WP_002263437.1	competence type IV pilus major pilin ComGC	Machinery gene
CO204_RS01195 (CO204_01195)	comYD	230965..231369 (+)	405	WP_002263438.1	competence type IV pilus minor pilin ComGD	Machinery gene
CO204_RS01200 (CO204_01200)	comYE	231341..231634 (+)	294	WP_002263439.1	competence type IV pilus minor pilin ComGE	Machinery gene
CO204_RS01205 (CO204_01205)	comYF	231621..232055 (+)	435	WP_002263440.1	competence type IV pilus minor pilin ComGF	Machinery gene
CO204_RS01210 (CO204_01210)	comYG	232033..232422 (+)	390	WP_002263441.1	competence type IV pilus minor pilin ComGG	Machinery gene
CO204_RS01215 (CO204_01215)	comYH	232477..233430 (+)	954	WP_002269808.1	class I SAM-dependent methyltransferase	Machinery gene
CO204_RS01220 (CO204_01220)	-	233489..234688 (+)	1200	WP_002263443.1	acetate kinase	-
CO204_RS01225 (CO204_01225)	tnpA	234901..235364 (+)	464	Protein_206	IS200/IS605 family transposase	-
CO204_RS01235 (CO204_01235)	-	235992..236237 (+)	246	WP_002263444.1	helix-turn-helix transcriptional regulator	-

Sequence

Protein

• Length: 134 a.a.
• Molecular weight: 15444.77 Da
• Isoelectric Point: 9.5619

>NTDB_id=247397 CO204_RS01195 WP_002263438.1 230965..231369(+) (comYD) [Streptococcus mutans strain LAR01]
MSRIKAFTLIESLVTLAITSFLILSFSGSITQTFAKVEERLFFLSFEHLYRDTQKLSVYQRQDMTLILKSEYISNGVEVL
KIPKDVKLERNKTLHFDQAGGNSSLEKLVFQTSDEKRVTYQLYIGSGQYKKTES

Nucleotide

• Length: 405 bp

>NTDB_id=247397 CO204_RS01195 WP_002263438.1 230965..231369(+) (comYD) [Streptococcus mutans strain LAR01]
ATGTCGCGAATTAAAGCTTTTACGCTTATAGAAAGTTTAGTGACTTTGGCAATTACTAGTTTTTTGATTTTAAGCTTTTC
AGGTAGTATAACTCAAACGTTTGCCAAAGTAGAAGAGCGTCTCTTTTTTCTTTCTTTTGAACATCTTTACCGTGACACGC
AAAAACTTAGTGTTTATCAAAGACAAGATATGACTTTAATATTAAAAAGCGAATATATATCAAATGGTGTTGAAGTACTT
AAAATCCCTAAGGATGTCAAACTAGAGAGGAATAAAACTTTGCACTTTGATCAGGCAGGAGGAAATTCTTCTTTAGAAAA
ACTTGTTTTTCAAACATCTGATGAAAAAAGAGTTACTTATCAATTATATATAGGAAGTGGTCAGTATAAAAAAACAGAAA
GTTAA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (1-25)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYD	Streptococcus mutans UA140	100	100	1
comYD	Streptococcus mutans UA159	100	100	1
comYD	Streptococcus gordonii str. Challis substr. CH1	50.388	96.269	0.485
comGD/cglD	Streptococcus mitis NCTC 12261	49.612	96.269	0.478
comGD/cglD	Streptococcus pneumoniae Rx1	49.219	95.522	0.47
comGD/cglD	Streptococcus pneumoniae D39	49.219	95.522	0.47
comGD/cglD	Streptococcus pneumoniae R6	49.219	95.522	0.47
comGD/cglD	Streptococcus pneumoniae TIGR4	48.438	95.522	0.463
comGD/cglD	Streptococcus mitis SK321	48.438	95.522	0.463
comGD	Lactococcus lactis subsp. cremoris KW2	39.394	98.507	0.388