Detailed information
Bioinformatically predicted
Overview
| Name | comEA | Type | Machinery gene |
| Locus tag | FORC72_RS12585 | Genome accession | NZ_CP023472 |
| Coordinates | 2380581..2380865 (-) | Length | 94 a.a. |
| NCBI ID | WP_162935517.1 | Uniprot ID | - |
| Organism | Vibrio parahaemolyticus strain FORC_072 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2375581..2385865
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FORC72_RS12560 (FORC72_2144) | - | 2376075..2377289 (+) | 1215 | WP_005456922.1 | pyridoxal phosphate-dependent aminotransferase | - |
| FORC72_RS12565 (FORC72_2145) | yfbR | 2377380..2377964 (+) | 585 | WP_005482513.1 | 5'-deoxynucleotidase | - |
| FORC72_RS12570 (FORC72_2146) | - | 2377977..2379311 (+) | 1335 | WP_041954079.1 | anti-phage deoxyguanosine triphosphatase | - |
| FORC72_RS12575 (FORC72_2147) | - | 2379321..2379935 (-) | 615 | WP_005482520.1 | DTW domain-containing protein | - |
| FORC72_RS12580 (FORC72_2148) | rrtA | 2379939..2380490 (+) | 552 | WP_005495980.1 | rhombosortase | - |
| FORC72_RS12585 (FORC72_2149) | comEA | 2380581..2380865 (-) | 285 | WP_162935517.1 | ComEA family DNA-binding protein | Machinery gene |
| FORC72_RS12590 (FORC72_2150) | ppiD | 2381016..2382875 (-) | 1860 | WP_120459011.1 | peptidylprolyl isomerase | - |
| FORC72_RS12595 (FORC72_2151) | - | 2383075..2383347 (-) | 273 | WP_005382341.1 | HU family DNA-binding protein | - |
Sequence
Protein
Download Length: 94 a.a. Molecular weight: 10219.89 Da Isoelectric Point: 5.8425
>NTDB_id=247349 FORC72_RS12585 WP_162935517.1 2380581..2380865(-) (comEA) [Vibrio parahaemolyticus strain FORC_072]
MKWILALCLVVFAPLSLAADTKADKYEGIEITVNINTASAEEIATMLKGIGEKKAQSIVDYRTEHGPFKTAADLTNVKGI
GEATIKKNEDRILL
MKWILALCLVVFAPLSLAADTKADKYEGIEITVNINTASAEEIATMLKGIGEKKAQSIVDYRTEHGPFKTAADLTNVKGI
GEATIKKNEDRILL
Nucleotide
Download Length: 285 bp
>NTDB_id=247349 FORC72_RS12585 WP_162935517.1 2380581..2380865(-) (comEA) [Vibrio parahaemolyticus strain FORC_072]
ATGAAATGGATTTTAGCCTTGTGTTTAGTGGTGTTCGCACCACTCAGTTTGGCCGCTGATACCAAGGCTGATAAATATGA
AGGAATTGAAATTACGGTCAATATCAATACTGCTTCTGCAGAAGAGATAGCAACGATGCTGAAAGGTATTGGCGAAAAGA
AAGCGCAAAGCATAGTTGACTACCGTACCGAGCACGGCCCATTTAAAACAGCAGCTGATTTAACCAATGTAAAAGGAATT
GGTGAAGCAACCATCAAGAAAAACGAAGACCGCATTCTTCTATAA
ATGAAATGGATTTTAGCCTTGTGTTTAGTGGTGTTCGCACCACTCAGTTTGGCCGCTGATACCAAGGCTGATAAATATGA
AGGAATTGAAATTACGGTCAATATCAATACTGCTTCTGCAGAAGAGATAGCAACGATGCTGAAAGGTATTGGCGAAAAGA
AAGCGCAAAGCATAGTTGACTACCGTACCGAGCACGGCCCATTTAAAACAGCAGCTGATTTAACCAATGTAAAAGGAATT
GGTGAAGCAACCATCAAGAAAAACGAAGACCGCATTCTTCTATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
98.936 |
100 |
0.989 |
| comEA | Vibrio campbellii strain DS40M4 |
76.842 |
100 |
0.777 |
| comEA | Vibrio cholerae C6706 |
61.458 |
100 |
0.628 |
| comEA | Vibrio cholerae strain A1552 |
61.458 |
100 |
0.628 |
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
56.452 |
65.957 |
0.372 |
| comE1/comEA | Haemophilus influenzae Rd KW20 |
56.452 |
65.957 |
0.372 |
| comE | Neisseria gonorrhoeae MS11 |
38.889 |
95.745 |
0.372 |
| comE | Neisseria gonorrhoeae MS11 |
38.889 |
95.745 |
0.372 |
| comE | Neisseria gonorrhoeae MS11 |
38.889 |
95.745 |
0.372 |
| comE | Neisseria gonorrhoeae MS11 |
38.889 |
95.745 |
0.372 |
| comEA | Acinetobacter baylyi ADP1 |
47.222 |
76.596 |
0.362 |