Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | CNO08_RS19090 | Genome accession | NZ_CP023465 |
| Coordinates | 4774106..4775362 (+) | Length | 418 a.a. |
| NCBI ID | WP_096415551.1 | Uniprot ID | - |
| Organism | Lysobacter capsici strain KNU-14 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 4769106..4780362
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CNO08_RS19070 (CNO08_19070) | - | 4769521..4770678 (-) | 1158 | WP_096415545.1 | glycosyltransferase | - |
| CNO08_RS19075 (CNO08_19075) | - | 4770675..4771379 (-) | 705 | WP_051547075.1 | class I SAM-dependent methyltransferase | - |
| CNO08_RS19080 (CNO08_19080) | - | 4771376..4772239 (-) | 864 | WP_096415548.1 | glycosyltransferase family 2 protein | - |
| CNO08_RS19085 (CNO08_19085) | pilB | 4772375..4774102 (+) | 1728 | WP_046657789.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| CNO08_RS19090 (CNO08_19090) | pilC | 4774106..4775362 (+) | 1257 | WP_096415551.1 | type II secretion system F family protein | Machinery gene |
| CNO08_RS19095 (CNO08_19095) | - | 4775384..4776271 (+) | 888 | WP_036104586.1 | A24 family peptidase | - |
| CNO08_RS19100 (CNO08_19100) | coaE | 4776275..4776895 (+) | 621 | WP_096415554.1 | dephospho-CoA kinase | - |
| CNO08_RS19105 (CNO08_19105) | - | 4777046..4778020 (-) | 975 | WP_232526167.1 | Nudix family hydrolase | - |
Sequence
Protein
Download Length: 418 a.a. Molecular weight: 45399.72 Da Isoelectric Point: 10.3304
>NTDB_id=247245 CNO08_RS19090 WP_096415551.1 4774106..4775362(+) (pilC) [Lysobacter capsici strain KNU-14]
MSATRSATKTPTPVRRANPLDVFVWQGTDKRGITMKGEQAAKNANLLRAELRRQGITPTVVKPKGKSLFGAAGKRITPGE
IAIFSRQIATMMKSGVPIVTSLEIIGEGHKNPRMKKLLNTVRADLESGSSLHEAMSKHPVQFDELYRNLVKAGESAGVLE
TVLDTVASYKENIETLKGKIKKALFYPATVVAVAILVSAILLIFVVPQFQATFKSFGADLPAFTLMVIGMSDFMIKWWWA
VLILVVGAAVAFIMAKNRSPAFAHFLDRAMLKIPVVGQILHNAAIARFARTLAVTFRAGVPLVEALDTVAGATGNVVYEK
AVYRIRDDVSVGYQVNMAMKQVNLFPHMVVQMTAIGEEAGALDTMLVKVAEFYEQEVNNAVDALSSLLEPLIMVILGVIV
GGMVIAMYLPIFKLAATI
MSATRSATKTPTPVRRANPLDVFVWQGTDKRGITMKGEQAAKNANLLRAELRRQGITPTVVKPKGKSLFGAAGKRITPGE
IAIFSRQIATMMKSGVPIVTSLEIIGEGHKNPRMKKLLNTVRADLESGSSLHEAMSKHPVQFDELYRNLVKAGESAGVLE
TVLDTVASYKENIETLKGKIKKALFYPATVVAVAILVSAILLIFVVPQFQATFKSFGADLPAFTLMVIGMSDFMIKWWWA
VLILVVGAAVAFIMAKNRSPAFAHFLDRAMLKIPVVGQILHNAAIARFARTLAVTFRAGVPLVEALDTVAGATGNVVYEK
AVYRIRDDVSVGYQVNMAMKQVNLFPHMVVQMTAIGEEAGALDTMLVKVAEFYEQEVNNAVDALSSLLEPLIMVILGVIV
GGMVIAMYLPIFKLAATI
Nucleotide
Download Length: 1257 bp
>NTDB_id=247245 CNO08_RS19090 WP_096415551.1 4774106..4775362(+) (pilC) [Lysobacter capsici strain KNU-14]
ATGTCCGCGACTCGATCCGCCACCAAGACCCCCACCCCGGTACGCCGCGCCAATCCCCTGGACGTCTTCGTCTGGCAAGG
CACCGACAAGCGCGGCATCACGATGAAGGGCGAGCAGGCGGCGAAGAACGCCAACCTGCTGCGCGCCGAACTGCGTCGCC
AGGGCATCACCCCGACCGTGGTCAAGCCCAAGGGCAAGTCGCTGTTCGGGGCCGCCGGCAAGCGCATCACCCCCGGTGAA
ATCGCCATCTTCAGCCGTCAGATCGCGACGATGATGAAATCGGGCGTACCGATCGTGACCTCGCTGGAGATCATCGGCGA
AGGGCACAAGAACCCGCGCATGAAGAAGCTGCTGAACACCGTGCGCGCCGACCTGGAAAGCGGCTCGTCGCTGCACGAGG
CCATGTCCAAGCATCCGGTCCAGTTCGACGAGCTCTACCGCAACCTGGTCAAGGCCGGCGAATCGGCCGGTGTGCTCGAG
ACCGTGCTCGACACGGTCGCCAGCTACAAGGAAAACATCGAAACCCTCAAGGGCAAGATCAAGAAGGCGCTGTTCTACCC
GGCCACGGTCGTGGCGGTGGCGATCCTGGTCAGCGCCATCCTGCTGATCTTCGTGGTGCCGCAGTTCCAAGCCACCTTCA
AGAGCTTCGGCGCCGACCTGCCGGCCTTCACCTTGATGGTGATCGGCATGAGCGACTTCATGATCAAGTGGTGGTGGGCC
GTGCTGATCCTGGTCGTCGGCGCCGCGGTCGCCTTCATCATGGCCAAGAACCGCTCGCCCGCCTTCGCCCACTTCCTCGA
CCGGGCGATGCTCAAGATCCCGGTGGTCGGGCAGATCCTGCACAACGCGGCGATCGCCCGCTTCGCCCGTACCCTGGCGG
TGACCTTCCGCGCCGGCGTGCCGCTGGTCGAGGCGCTCGACACGGTCGCCGGCGCGACCGGCAACGTGGTCTACGAAAAG
GCGGTCTACCGCATCCGCGACGACGTCTCGGTCGGCTACCAGGTCAACATGGCGATGAAGCAGGTCAACCTGTTCCCGCA
CATGGTGGTGCAGATGACCGCGATCGGCGAAGAGGCCGGTGCGCTCGACACCATGCTGGTCAAGGTCGCCGAGTTCTACG
AGCAGGAAGTCAACAACGCGGTCGACGCGCTGTCGAGCCTGCTGGAGCCGCTGATCATGGTCATCCTCGGCGTGATCGTC
GGCGGCATGGTCATCGCCATGTACCTGCCGATCTTCAAACTTGCTGCGACCATCTGA
ATGTCCGCGACTCGATCCGCCACCAAGACCCCCACCCCGGTACGCCGCGCCAATCCCCTGGACGTCTTCGTCTGGCAAGG
CACCGACAAGCGCGGCATCACGATGAAGGGCGAGCAGGCGGCGAAGAACGCCAACCTGCTGCGCGCCGAACTGCGTCGCC
AGGGCATCACCCCGACCGTGGTCAAGCCCAAGGGCAAGTCGCTGTTCGGGGCCGCCGGCAAGCGCATCACCCCCGGTGAA
ATCGCCATCTTCAGCCGTCAGATCGCGACGATGATGAAATCGGGCGTACCGATCGTGACCTCGCTGGAGATCATCGGCGA
AGGGCACAAGAACCCGCGCATGAAGAAGCTGCTGAACACCGTGCGCGCCGACCTGGAAAGCGGCTCGTCGCTGCACGAGG
CCATGTCCAAGCATCCGGTCCAGTTCGACGAGCTCTACCGCAACCTGGTCAAGGCCGGCGAATCGGCCGGTGTGCTCGAG
ACCGTGCTCGACACGGTCGCCAGCTACAAGGAAAACATCGAAACCCTCAAGGGCAAGATCAAGAAGGCGCTGTTCTACCC
GGCCACGGTCGTGGCGGTGGCGATCCTGGTCAGCGCCATCCTGCTGATCTTCGTGGTGCCGCAGTTCCAAGCCACCTTCA
AGAGCTTCGGCGCCGACCTGCCGGCCTTCACCTTGATGGTGATCGGCATGAGCGACTTCATGATCAAGTGGTGGTGGGCC
GTGCTGATCCTGGTCGTCGGCGCCGCGGTCGCCTTCATCATGGCCAAGAACCGCTCGCCCGCCTTCGCCCACTTCCTCGA
CCGGGCGATGCTCAAGATCCCGGTGGTCGGGCAGATCCTGCACAACGCGGCGATCGCCCGCTTCGCCCGTACCCTGGCGG
TGACCTTCCGCGCCGGCGTGCCGCTGGTCGAGGCGCTCGACACGGTCGCCGGCGCGACCGGCAACGTGGTCTACGAAAAG
GCGGTCTACCGCATCCGCGACGACGTCTCGGTCGGCTACCAGGTCAACATGGCGATGAAGCAGGTCAACCTGTTCCCGCA
CATGGTGGTGCAGATGACCGCGATCGGCGAAGAGGCCGGTGCGCTCGACACCATGCTGGTCAAGGTCGCCGAGTTCTACG
AGCAGGAAGTCAACAACGCGGTCGACGCGCTGTCGAGCCTGCTGGAGCCGCTGATCATGGTCATCCTCGGCGTGATCGTC
GGCGGCATGGTCATCGCCATGTACCTGCCGATCTTCAAACTTGCTGCGACCATCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Pseudomonas stutzeri DSM 10701 |
56.927 |
94.976 |
0.541 |
| pilC | Legionella pneumophila strain ERS1305867 |
54.95 |
96.651 |
0.531 |
| pilC | Acinetobacter baylyi ADP1 |
52.217 |
97.129 |
0.507 |
| pilC | Acinetobacter baumannii D1279779 |
51.724 |
97.129 |
0.502 |
| pilG | Neisseria gonorrhoeae MS11 |
43.424 |
96.411 |
0.419 |
| pilG | Neisseria meningitidis 44/76-A |
43.176 |
96.411 |
0.416 |
| pilC | Vibrio campbellii strain DS40M4 |
41.045 |
96.172 |
0.395 |
| pilC | Vibrio cholerae strain A1552 |
40 |
95.694 |
0.383 |
| pilC | Thermus thermophilus HB27 |
36.967 |
100 |
0.373 |