Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   AOY79_RS04125 Genome accession   NZ_CP028749
Coordinates   851890..853125 (-) Length   411 a.a.
NCBI ID   WP_021516453.1    Uniprot ID   -
Organism   Escherichia coli strain A26     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 846890..858125
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOY79_RS04115 (AOY79_04360) - 849202..850575 (+) 1374 WP_021516455.1 bifunctional cytidylyltransferase/SDR family oxidoreductase -
  AOY79_RS04120 (AOY79_04365) - 850592..851728 (+) 1137 WP_021516454.1 hypothetical protein -
  AOY79_RS04125 (AOY79_04370) kpsS 851890..853125 (-) 1236 WP_021516453.1 capsular biosynthesis protein Regulator
  AOY79_RS04130 (AOY79_04375) - 853160..855187 (-) 2028 WP_021516452.1 capsular polysaccharide biosynthesis protein -
  AOY79_RS04135 (AOY79_04380) kdsB 855184..855924 (-) 741 WP_064238230.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  AOY79_RS04140 (AOY79_04385) - 855934..857610 (-) 1677 WP_001332993.1 polysaccharide biosynthesis/export family protein -

Sequence

Protein


Download         Length: 411 a.a.        Molecular weight: 49052.55 Da        Isoelectric Point: 10.0138

>NTDB_id=246598 AOY79_RS04125 WP_021516453.1 851890..853125(-) (kpsS) [Escherichia coli strain A26]
MQGNALTVLLSGKKYLLLQGPMGPFFNDVAEWLESLGRNAVNVVFNGGDRFYCRHRQYLAYYQTPKEFPGWLRDLHRQYD
FDTILCFGDCRPLHKEAKRWAKSKGIRFLAFEEGYLRPQFITVEEGGVNAYSSLPRDPDFYRKLPDMPAPHVENLKPSTM
KRIGHAMWYYLMGWHYRHEFPRYRHHKSFSPWYEARCWVRAYWRKQLYKVTQRKVLPRLMNELDQRYYLAVLQVYNDSQI
RNHSNYNDVRDYINEVMYSFSRKAPKESYLVIKHHPMDRGHRLYRPLIKRLSKEYGLGERVIYVHDLPMPELLRHAKAVV
TINSTAGISALIHNKPLKVMGNALYDIKGLTYQGHLHQFWQADFKPDMKLFKKFRGYLLVRTQINGVYYGDRCFEHDIKV
DKDSWSLTRQV

Nucleotide


Download         Length: 1236 bp        

>NTDB_id=246598 AOY79_RS04125 WP_021516453.1 851890..853125(-) (kpsS) [Escherichia coli strain A26]
ATGCAAGGTAATGCACTAACCGTTTTATTATCCGGTAAAAAATATCTGCTATTGCAGGGGCCGATGGGACCTTTTTTCAA
TGACGTCGCCGAATGGTTAGAGTCATTAGGACGTAACGCTGTGAATGTTGTATTCAACGGTGGGGATCGTTTTTACTGCC
GCCATCGACAATACCTGGCTTACTACCAAACGCCGAAAGAGTTTCCCGGATGGTTACGGGATCTCCATCGGCAATATGAC
TTTGATACCATCCTCTGCTTTGGTGACTGCCGCCCATTGCACAAAGAAGCAAAACGCTGGGCAAAGTCGAAAGGGATCCG
CTTTCTGGCATTTGAGGAAGGATATTTACGCCCGCAATTTATTACCGTTGAAGAAGGCGGAGTGAACGCATATTCATCGC
TACCGCGCGATCCGGATTTTTATCGTAAGTTACCAGATATGCCTGCGCCGCACGTTGAGAACTTAAAACCTTCAACGATG
AAACGCATTGGCCATGCGATGTGGTATTACCTGATGGGCTGGCATTACCGTCATGAGTTCCCTCGCTACCGCCACCACAA
ATCATTTTCCCCCTGGTATGAAGCTCGTTGCTGGGTTCGTGCGTACTGGCGCAAGCAACTTTACAAGGTAACACAGCGTA
AAGTATTGCCGCGGTTAATGAATGAGCTGGATCAGCGTTATTATCTTGCCGTTTTGCAGGTGTATAACGATAGCCAGATT
CGTAACCACAGCAATTATAACGATGTGCGAGATTATATTAATGAAGTCATGTACTCATTTTCGCGTAAAGCGCCAAAAGA
AAGTTATTTGGTGATCAAGCACCATCCAATGGATCGTGGTCACAGACTCTATCGACCATTAATTAAACGGTTGAGTAAGG
AATATGGCTTAGGTGAGCGCGTCATTTATGTGCACGATCTCCCGATGCCGGAATTGTTACGCCACGCAAAAGCGGTGGTG
ACAATTAACAGTACGGCGGGGATATCTGCGCTGATTCACAACAAACCACTCAAAGTGATGGGCAATGCCCTGTACGACAT
CAAAGGCTTGACGTATCAAGGGCATTTGCACCAGTTCTGGCAGGCCGATTTTAAACCGGATATGAAACTGTTTAAGAAGT
TTCGGGGGTATTTATTGGTGAGGACGCAGATTAATGGGGTTTATTATGGTGATAGATGTTTTGAACATGATATTAAGGTG
GATAAGGATTCTTGGAGTCTTACACGTCAAGTTTGA

Domains

Predicted by InterProScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(83-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

39.898

95.134

0.38

Multiple sequence alignment