Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   CMV05_RS02535 Genome accession   NZ_CP023310
Coordinates   509623..510849 (-) Length   408 a.a.
NCBI ID   WP_096035997.1    Uniprot ID   -
Organism   Vibrio anguillarum strain VIB12 isolate Sea bass     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 504623..515849
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CMV05_RS02495 (CMV05_02495) rpsP 504962..505210 (+) 249 WP_010319522.1 30S ribosomal protein S16 -
  CMV05_RS02500 (CMV05_02500) rimM 505240..505794 (+) 555 WP_013857691.1 ribosome maturation factor RimM -
  CMV05_RS02505 (CMV05_02505) trmD 505822..506568 (+) 747 WP_010319524.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  CMV05_RS02510 (CMV05_02510) rplS 506610..506963 (+) 354 WP_010319525.1 50S ribosomal protein L19 -
  CMV05_RS02515 (CMV05_02515) yacG 507044..507241 (-) 198 WP_010319526.1 DNA gyrase inhibitor YacG -
  CMV05_RS02520 (CMV05_02520) zapD 507331..508071 (-) 741 WP_013857689.1 cell division protein ZapD -
  CMV05_RS02525 (CMV05_02525) coaE 508104..508712 (-) 609 WP_096035996.1 dephospho-CoA kinase -
  CMV05_RS02530 (CMV05_02530) pilD 508703..509584 (-) 882 WP_088720881.1 A24 family peptidase Machinery gene
  CMV05_RS02535 (CMV05_02535) pilC 509623..510849 (-) 1227 WP_096035997.1 type II secretion system F family protein Machinery gene
  CMV05_RS02540 (CMV05_02540) pilB 510892..512580 (-) 1689 WP_096035998.1 type IV-A pilus assembly ATPase PilB Machinery gene
  CMV05_RS02545 (CMV05_02545) - 512585..513040 (-) 456 WP_176428646.1 pilin -
  CMV05_RS02550 (CMV05_02550) nadC 513300..514187 (-) 888 WP_017047002.1 carboxylating nicotinate-nucleotide diphosphorylase -
  CMV05_RS02555 (CMV05_02555) ampD 514312..514863 (+) 552 WP_234913521.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  CMV05_RS02560 (CMV05_02560) fldB 514885..515403 (-) 519 WP_013857680.1 flavodoxin FldB -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45293.72 Da        Isoelectric Point: 10.4379

>NTDB_id=245861 CMV05_RS02535 WP_096035997.1 509623..510849(-) (pilC) [Vibrio anguillarum strain VIB12 isolate Sea bass]
MNTKIKSELKNYRWKGINSSGKKVSGQTLALTELEVRDKLKEQHIQIKKIKKGGVSFITRLAHRVKARDITILTRQLATM
LTTGVPIVQALKLVGDNHRKAEMKSILSQVTKGVEAGTPISKAMRTASIHFDTLYVDLIHTGEQSGNLAEVFERLATYRE
KSEQLRAKVIKALIYPTMVVLVALGVSYLMLTMVIPEFESMFKGFGAELPWFTQQVLKLSHWVQSYSLWVLIIIILTTIA
VKAVRQKSFLIRLKTSRLGLKFPILGGVIGKASIAKFSRTLATSFSAGIPILASLKTTAKTAGNVHFETAINEVYRDTAA
GMPMYIAMRNTEAFPEMVLQMVMIGEESGRLDDMLNKVVTIYEFEVDNTVDNLGKILEPLIIVFLGTVVGGLVVAMYLPI
FNLMSVLG

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=245861 CMV05_RS02535 WP_096035997.1 509623..510849(-) (pilC) [Vibrio anguillarum strain VIB12 isolate Sea bass]
ATGAACACAAAAATCAAATCAGAACTCAAAAATTATCGTTGGAAAGGCATCAATAGTTCGGGCAAAAAAGTATCTGGCCA
AACTCTCGCTTTAACCGAACTGGAAGTGCGTGACAAACTTAAAGAGCAGCACATTCAAATCAAAAAAATCAAAAAAGGGG
GCGTCTCTTTTATCACTCGCTTGGCTCATCGCGTGAAGGCCAGAGACATCACCATTCTGACACGCCAATTAGCGACCATG
CTGACCACGGGCGTGCCCATCGTGCAAGCCTTAAAACTGGTCGGAGATAACCATCGCAAAGCCGAAATGAAATCCATTTT
GTCGCAAGTCACCAAAGGGGTTGAAGCCGGAACGCCAATTTCCAAAGCGATGCGTACCGCCAGCATTCATTTCGATACCT
TGTATGTTGATCTCATTCACACAGGCGAACAGTCAGGTAACTTAGCTGAAGTGTTTGAGCGGCTAGCGACTTATCGAGAA
AAAAGTGAACAACTGCGCGCTAAAGTCATTAAAGCGCTCATCTACCCAACCATGGTGGTGTTGGTCGCGTTAGGTGTTTC
TTACTTAATGCTTACTATGGTGATCCCTGAGTTTGAAAGCATGTTCAAAGGATTCGGAGCCGAATTACCTTGGTTTACAC
AGCAAGTATTGAAACTCTCTCATTGGGTGCAAAGTTACAGTTTGTGGGTACTCATCATCATAATCCTCACCACAATTGCC
GTGAAAGCAGTACGCCAAAAATCTTTTTTAATACGCTTAAAAACCAGCCGATTAGGATTAAAGTTTCCCATTCTTGGCGG
GGTGATAGGCAAAGCCTCTATTGCTAAATTCAGTCGCACACTCGCCACCAGTTTTAGTGCAGGCATTCCGATTTTAGCCA
GCTTAAAAACCACCGCCAAAACCGCTGGCAATGTCCATTTTGAGACGGCGATTAATGAGGTCTATCGTGATACAGCAGCC
GGTATGCCAATGTATATTGCGATGCGTAATACCGAAGCCTTTCCCGAAATGGTGCTGCAAATGGTGATGATTGGTGAAGA
ATCAGGCCGATTGGATGACATGCTCAATAAAGTCGTCACCATTTACGAATTTGAAGTCGATAATACCGTCGATAACTTAG
GCAAAATTCTCGAACCATTGATCATTGTCTTTTTGGGTACGGTGGTCGGCGGTTTGGTGGTGGCAATGTACTTGCCCATC
TTTAACTTAATGAGTGTATTAGGATAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-196)

Type II secretion system (T2SS), protein F (T2SSF)

(277-399)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

88.25

98.039

0.865
  pilC Vibrio campbellii strain DS40M4

74.752

99.02

0.74
  pilC Acinetobacter baylyi ADP1

41.96

97.549

0.409
  pilC Acinetobacter baumannii D1279779

40.686

100

0.407
  pilC Pseudomonas stutzeri DSM 10701

40.909

97.059

0.397
  pilG Neisseria gonorrhoeae MS11

40.05

98.529

0.395
  pilG Neisseria meningitidis 44/76-A

39.702

98.775

0.392
  pilC Legionella pneumophila strain ERS1305867

39.401

98.284

0.387

Multiple sequence alignment