Detailed information NTG0245860

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: CMV05_RS02530
• Genome accession: NZ_CP023310
• Coordinates: 508703..509584 (-)
• Length: 293 a.a.
• NCBI ID: WP_088720881.1
• Uniprot ID: -
• Organism: Vibrio anguillarum strain VIB12 isolate Sea bass
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 503703..514584

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CMV05_RS02495 (CMV05_02495)	rpsP	504962..505210 (+)	249	WP_010319522.1	30S ribosomal protein S16	-
CMV05_RS02500 (CMV05_02500)	rimM	505240..505794 (+)	555	WP_013857691.1	ribosome maturation factor RimM	-
CMV05_RS02505 (CMV05_02505)	trmD	505822..506568 (+)	747	WP_010319524.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
CMV05_RS02510 (CMV05_02510)	rplS	506610..506963 (+)	354	WP_010319525.1	50S ribosomal protein L19	-
CMV05_RS02515 (CMV05_02515)	yacG	507044..507241 (-)	198	WP_010319526.1	DNA gyrase inhibitor YacG	-
CMV05_RS02520 (CMV05_02520)	zapD	507331..508071 (-)	741	WP_013857689.1	cell division protein ZapD	-
CMV05_RS02525 (CMV05_02525)	coaE	508104..508712 (-)	609	WP_096035996.1	dephospho-CoA kinase	-
CMV05_RS02530 (CMV05_02530)	pilD	508703..509584 (-)	882	WP_088720881.1	A24 family peptidase	Machinery gene
CMV05_RS02535 (CMV05_02535)	pilC	509623..510849 (-)	1227	WP_096035997.1	type II secretion system F family protein	Machinery gene
CMV05_RS02540 (CMV05_02540)	pilB	510892..512580 (-)	1689	WP_096035998.1	type IV-A pilus assembly ATPase PilB	Machinery gene
CMV05_RS02545 (CMV05_02545)	-	512585..513040 (-)	456	WP_176428646.1	pilin	-
CMV05_RS02550 (CMV05_02550)	nadC	513300..514187 (-)	888	WP_017047002.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 293 a.a.
• Molecular weight: 32860.15 Da
• Isoelectric Point: 7.2157

>NTDB_id=245860 CMV05_RS02530 WP_088720881.1 508703..509584(-) (pilD) [Vibrio anguillarum strain VIB12 isolate Sea bass]
MEVFIYYPWLFPLFAALFGLIVGSFLNVVIYRLPKIMEREWRQECADCFPEYHIAPPEGQLTLSVPRSSCPHCDAPIRII
DNIPLLSWLFLKGKCSRCQGPISARYPLIELLTASMSFVVASHFGFSYFSLALLFFTFVLIAATFIDFDTMLLPDKLTLP
LLWAGLSLSLMHISPVSLQDAVIGAIAGYLSLWSVYWLFKLVTGKEGMGYGDFKLLAALGAWLGWQYLPIIILMSSVVGI
VFGLIQLRLQKKGIDKAFPFGPYLAIAGWLTLLWGNDIMSWYLGSIMGLSSWG

Nucleotide

• Length: 882 bp

>NTDB_id=245860 CMV05_RS02530 WP_088720881.1 508703..509584(-) (pilD) [Vibrio anguillarum strain VIB12 isolate Sea bass]
ATGGAAGTTTTTATTTATTACCCTTGGCTCTTTCCACTTTTTGCAGCGTTATTTGGCTTAATCGTGGGGAGTTTTCTCAA
TGTGGTCATTTATCGTCTACCCAAAATCATGGAGCGAGAATGGCGACAAGAATGCGCTGACTGCTTTCCCGAATATCACA
TTGCGCCACCGGAAGGGCAACTCACGCTCAGTGTCCCCCGTTCTAGCTGCCCACACTGTGATGCGCCAATCCGTATTATT
GACAATATTCCGCTACTCAGTTGGCTCTTTTTAAAAGGGAAATGTTCCCGCTGCCAAGGCCCGATCAGTGCACGCTATCC
TTTGATTGAACTGCTCACCGCCAGTATGAGCTTTGTCGTGGCTAGCCACTTCGGTTTTAGTTATTTTTCACTAGCGCTAT
TGTTTTTCACTTTTGTGCTCATCGCGGCGACGTTTATCGATTTCGATACCATGCTGTTACCCGACAAGCTGACACTGCCA
CTACTGTGGGCGGGCCTCAGCTTATCATTGATGCACATTAGCCCAGTCAGTTTGCAAGATGCAGTGATCGGCGCCATTGC
TGGCTATCTGAGCTTATGGTCGGTCTATTGGCTGTTTAAACTCGTCACAGGCAAAGAAGGAATGGGTTATGGCGATTTCA
AACTGCTGGCTGCTCTCGGCGCTTGGTTGGGCTGGCAATATCTGCCCATCATCATTCTCATGTCATCTGTGGTTGGCATT
GTCTTTGGCCTAATTCAATTGCGCTTGCAAAAAAAAGGGATTGACAAAGCCTTTCCTTTTGGCCCCTATCTCGCCATTGC
TGGCTGGCTAACCTTGTTGTGGGGTAACGATATTATGAGTTGGTATTTAGGTTCAATTATGGGGTTATCGTCATGGGGTT
AG

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	76.736	98.294	0.754
pilD	Vibrio campbellii strain DS40M4	76.125	98.635	0.751
pilD	Acinetobacter nosocomialis M2	56.458	92.491	0.522
pilD	Acinetobacter baumannii D1279779	56.089	92.491	0.519
pilD	Neisseria gonorrhoeae MS11	46.552	98.976	0.461