Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   CLM74_RS16890 Genome accession   NZ_CP023271
Coordinates   3689077..3690336 (+) Length   419 a.a.
NCBI ID   WP_105164560.1    Uniprot ID   A0AA43HQC6
Organism   Stenotrophomonas sp. MYb57     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3684077..3695336
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CLM74_RS16875 (CLM74_16805) pilR 3684817..3686190 (+) 1374 WP_025874296.1 sigma-54 dependent transcriptional regulator Regulator
  CLM74_RS16880 (CLM74_16810) pilB 3686489..3688219 (-) 1731 WP_105164558.1 type IV-A pilus assembly ATPase PilB Machinery gene
  CLM74_RS21815 (CLM74_16815) - 3688349..3688729 (-) 381 WP_105164559.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  CLM74_RS16890 (CLM74_16820) pilC 3689077..3690336 (+) 1260 WP_105164560.1 type II secretion system F family protein Machinery gene
  CLM74_RS16895 (CLM74_16825) - 3690344..3691207 (+) 864 WP_025874291.1 A24 family peptidase -
  CLM74_RS16900 (CLM74_16830) coaE 3691219..3691830 (+) 612 WP_105164561.1 dephospho-CoA kinase -
  CLM74_RS16905 (CLM74_16835) - 3691883..3692269 (-) 387 WP_105164562.1 hypothetical protein -
  CLM74_RS16910 (CLM74_16840) - 3692886..3694256 (-) 1371 WP_032975180.1 HAMP domain-containing sensor histidine kinase -
  CLM74_RS16915 (CLM74_16845) - 3694219..3694896 (-) 678 WP_025874286.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45731.04 Da        Isoelectric Point: 10.0535

>NTDB_id=245657 CLM74_RS16890 WP_105164560.1 3689077..3690336(+) (pilC) [Stenotrophomonas sp. MYb57]
MSVSRSAIKKEPVARATMELQPFVWQGTDKRGVRMKGEQLAKNANLLRAELRRQGINPDQVKAKPKPLFGAAGKAIGTKD
IAFFSRQMATMMKSGVPIVSALEIIGSGHKNPRMKKMVDGVRTDIEGGSSLYESVSKYPVQFDELYRNLVRAGEGAGVLE
TVLDTVATYKENIEGLKGKIKKALFYPAMVIAVALLVSAILLIFVVPQFEDVFKSFGADLPAFTQIIVNASRFMVSWWWL
IAIVVIGSIVGLVMAYKRSPAMQHAMDRYILKVPVIGQIMHNSAIARFARTTAVTFKAGVPLVEALGIVAGATGNKVYEE
AVLRMRDDVSVGYPVNMAMKQTNLFPHMVIQMTGIGEEAGALDTMLFKVAEYYEQEVNNAVDALSSLLEPMIMVFIGVVV
GGMVVGMYLPIFKLASVVG

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=245657 CLM74_RS16890 WP_105164560.1 3689077..3690336(+) (pilC) [Stenotrophomonas sp. MYb57]
ATGTCTGTCAGTCGCAGTGCGATCAAGAAGGAACCGGTGGCCCGCGCCACCATGGAGTTGCAGCCGTTTGTCTGGCAGGG
GACCGACAAACGCGGCGTGAGGATGAAGGGCGAGCAGCTGGCAAAGAACGCCAACCTGCTGCGCGCCGAGCTGCGCCGGC
AGGGGATCAACCCCGACCAGGTCAAGGCCAAGCCCAAACCACTGTTCGGTGCCGCCGGCAAGGCAATCGGCACCAAGGAC
ATCGCCTTCTTCAGCCGGCAGATGGCCACGATGATGAAGTCCGGCGTGCCGATCGTGTCGGCACTGGAGATCATCGGCAG
CGGGCACAAGAACCCGCGCATGAAGAAGATGGTCGACGGCGTCCGCACCGACATCGAGGGCGGCTCGTCACTGTACGAAT
CGGTCAGCAAGTACCCGGTGCAGTTCGACGAGCTGTACCGCAACCTGGTACGCGCCGGCGAAGGCGCCGGCGTGCTGGAA
ACGGTGCTGGACACCGTGGCCACCTACAAGGAAAACATCGAAGGCCTGAAAGGCAAGATCAAGAAGGCACTGTTCTACCC
GGCAATGGTCATCGCGGTAGCGCTGCTGGTCAGCGCCATCCTGCTGATCTTCGTGGTGCCGCAGTTCGAGGATGTGTTCA
AGAGCTTCGGCGCCGACCTGCCGGCCTTCACCCAGATCATCGTCAACGCTTCGCGCTTCATGGTGTCCTGGTGGTGGCTG
ATCGCCATCGTCGTGATCGGCAGCATCGTCGGCCTGGTCATGGCCTACAAGCGCTCACCCGCCATGCAGCACGCGATGGA
CCGCTACATCCTGAAGGTGCCGGTGATCGGCCAGATCATGCACAACAGTGCCATCGCCCGTTTCGCCCGCACCACGGCGG
TGACTTTCAAGGCCGGCGTGCCGCTGGTGGAGGCGCTGGGCATCGTCGCCGGCGCCACCGGCAACAAGGTCTATGAGGAG
GCCGTGCTGCGCATGCGCGATGACGTGTCGGTCGGCTATCCGGTCAACATGGCGATGAAGCAGACCAACCTGTTCCCGCA
CATGGTCATCCAGATGACCGGCATCGGCGAAGAGGCCGGCGCGCTGGATACCATGCTGTTCAAGGTGGCCGAGTATTATG
AGCAGGAGGTCAACAATGCCGTTGACGCCTTGAGCAGCCTGCTCGAACCGATGATCATGGTGTTCATCGGTGTGGTCGTG
GGCGGCATGGTCGTCGGCATGTACCTGCCGATCTTCAAGCTCGCCTCCGTCGTCGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

53.133

95.227

0.506
  pilC Pseudomonas stutzeri DSM 10701

52.273

94.511

0.494
  pilC Acinetobacter baylyi ADP1

49.754

96.897

0.482
  pilC Acinetobacter baumannii D1279779

49.631

97.136

0.482
  pilG Neisseria gonorrhoeae MS11

42.821

94.749

0.406
  pilG Neisseria meningitidis 44/76-A

42.317

94.749

0.401
  pilC Vibrio cholerae strain A1552

40.887

96.897

0.396
  pilC Vibrio campbellii strain DS40M4

40.399

95.704

0.387

Multiple sequence alignment