Detailed information NTG0245655

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: CLM74_RS16875
• Genome accession: NZ_CP023271
• Coordinates: 3684817..3686190 (+)
• Length: 457 a.a.
• NCBI ID: WP_025874296.1
• Uniprot ID: A0AA43HP51
• Organism: Stenotrophomonas sp. MYb57
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 3679817..3691190

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CLM74_RS16860 (CLM74_16790)	sucD	3680706..3681581 (-)	876	WP_017356169.1	succinate--CoA ligase subunit alpha	-
CLM74_RS16865 (CLM74_16795)	sucC	3681603..3682772 (-)	1170	WP_025874298.1	ADP-forming succinate--CoA ligase subunit beta	-
CLM74_RS16870 (CLM74_16800)	-	3683149..3684762 (+)	1614	WP_105164557.1	ATP-binding protein	-
CLM74_RS16875 (CLM74_16805)	pilR	3684817..3686190 (+)	1374	WP_025874296.1	sigma-54 dependent transcriptional regulator	Regulator
CLM74_RS16880 (CLM74_16810)	pilB	3686489..3688219 (-)	1731	WP_105164558.1	type IV-A pilus assembly ATPase PilB	Machinery gene
CLM74_RS21815 (CLM74_16815)	-	3688349..3688729 (-)	381	WP_105164559.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
CLM74_RS16890 (CLM74_16820)	pilC	3689077..3690336 (+)	1260	WP_105164560.1	type II secretion system F family protein	Machinery gene

Sequence

Protein

• Length: 457 a.a.
• Molecular weight: 49638.94 Da
• Isoelectric Point: 6.6449

>NTDB_id=245655 CLM74_RS16875 WP_025874296.1 3684817..3686190(+) (pilR) [Stenotrophomonas sp. MYb57]
MNETRSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCITDMRLPDGNGIELVSEIAQHYPRTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDITVLRGLVKHALELNNSERPVAGPAAEQAARLLGESPAMDVLRATIGKVARS
QAPVYILGESGVGKELVARTIHAQGARAAGPFVPVNCGAIPTELMESEFFGHRKGSFTGAHADKPGLFQAAHGGTLFLDE
VAELPLQMQVKLLRAIQEKSVRAVGAPSEEPVDVRILSATHKDLAELVEDGRFRHDLYYRINVIELRVPPLRERRQDLPA
LAASILARLARSHGRATPLLAPSALDALAQYGFPGNVRELENILERALALAEEDRIGADDLRLPQHAPRSPGSAAHAEAV
VDLHPGSAALPSYIEQLERSAIQRALEENRWNKTRTAAQLGITFRALRYKLKKLGME

Nucleotide

• Length: 1374 bp

>NTDB_id=245655 CLM74_RS16875 WP_025874296.1 3684817..3686190(+) (pilR) [Stenotrophomonas sp. MYb57]
ATGAACGAAACCCGCAGCGCCCTCGTCGTCGACGATGAACGCGATATCCGCGAACTGCTGGTGTTGACCCTCGGCCGCAT
GGGCCTGCGCATCAGCACCGCCGCCAACCTCGCCGAAGCCCGCGAACTGCTGGCCAGCAATCCCTATGACCTGTGCATCA
CCGACATGCGCCTGCCCGATGGCAATGGCATCGAACTGGTCAGCGAGATCGCCCAGCACTATCCGCGCACGCCGGTGGCG
ATGATCACCGCCTTCGGCAGCATGGACCTGGCCGTGGAAGCGCTGAAAGCCGGTGCCTTCGATTTCGTCAGCAAGCCGGT
GGACATCACCGTGCTGCGCGGCCTGGTCAAGCATGCGCTGGAACTCAACAACAGCGAACGCCCCGTTGCCGGCCCCGCCG
CCGAACAGGCCGCACGCCTGCTCGGCGAATCGCCGGCGATGGACGTGCTGCGCGCCACCATCGGCAAGGTTGCGCGCAGC
CAGGCGCCGGTCTACATCCTGGGAGAATCCGGGGTGGGCAAGGAACTGGTTGCACGCACCATCCATGCACAGGGTGCACG
CGCCGCTGGGCCGTTCGTGCCGGTCAACTGTGGCGCCATTCCCACCGAGTTGATGGAGAGCGAGTTCTTCGGCCATCGCA
AGGGCAGCTTCACCGGCGCCCATGCCGACAAGCCGGGACTGTTCCAGGCCGCACACGGCGGCACCCTGTTCCTGGATGAG
GTGGCCGAGCTGCCGCTGCAGATGCAGGTGAAGCTGCTGCGTGCGATCCAGGAAAAATCGGTGCGCGCGGTGGGCGCACC
CAGCGAAGAACCGGTGGACGTGCGCATCCTCTCGGCCACCCACAAGGATCTGGCCGAGCTGGTCGAAGACGGGCGCTTCC
GCCACGACCTCTACTACCGCATCAACGTCATCGAACTGCGCGTGCCGCCGCTGCGCGAGCGTCGCCAGGACCTGCCCGCA
CTGGCGGCGTCGATCCTGGCGCGGCTGGCCCGCAGCCACGGCCGCGCCACCCCGCTGCTGGCGCCGTCGGCGCTGGACGC
GTTGGCCCAGTACGGCTTCCCCGGCAACGTGCGCGAGCTGGAGAACATCCTGGAACGCGCGCTGGCACTGGCCGAGGAAG
ATCGTATCGGCGCCGACGACCTGCGCCTGCCGCAGCACGCACCGCGTTCACCGGGCAGTGCCGCCCATGCCGAAGCCGTG
GTCGATCTGCACCCGGGCAGTGCCGCCCTGCCCTCGTACATCGAGCAGCTCGAGCGCAGTGCGATCCAGCGCGCGCTGGA
AGAAAACCGCTGGAACAAGACCCGCACCGCCGCGCAGCTGGGCATCACCTTCCGTGCGCTGCGCTACAAGCTGAAGAAGC
TGGGGATGGAATAG

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (414-454)

• Sigma-54 interaction domain (Sigma54_activat) (140-306)

• Response regulator receiver domain (Response_reg) (8-114)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	63.596	99.781	0.635
pilR	Acinetobacter baumannii strain A118	48.38	100	0.49