Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   SYC_RS06530 Genome accession   NC_006576
Coordinates   1343850..1345115 (+) Length   421 a.a.
NCBI ID   WP_011243545.1    Uniprot ID   Q5N2P7
Organism   Synechococcus elongatus PCC 6301     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1338850..1350115
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SYC_RS06500 (syc1226_c) - 1339041..1339403 (-) 363 WP_011243538.1 DUF1823 family protein -
  SYC_RS06505 (syc1227_c) - 1339488..1339829 (-) 342 WP_011243539.1 carbon dioxide-concentrating mechanism protein CcmK -
  SYC_RS06510 (syc1228_c) - 1339874..1340182 (-) 309 WP_011243540.1 carbon dioxide-concentrating mechanism protein CcmK -
  SYC_RS06515 (syc1229_d) dusB 1340260..1341264 (+) 1005 WP_011243541.1 tRNA dihydrouridine synthase DusB -
  SYC_RS06520 (syc1231_d) glyA 1341461..1342744 (+) 1284 WP_011243543.1 serine hydroxymethyltransferase -
  SYC_RS06525 (syc1232_d) - 1342767..1343840 (+) 1074 WP_011243544.1 MraY family glycosyltransferase -
  SYC_RS06530 (syc1233_d) cinA 1343850..1345115 (+) 1266 WP_011243545.1 competence/damage-inducible protein A Machinery gene
  SYC_RS06535 (syc1234_c) - 1345125..1346729 (-) 1605 WP_011243546.1 NuoF family protein -
  SYC_RS06540 (syc1235_c) hoxE 1346729..1347226 (-) 498 WP_011243547.1 bidirectional hydrogenase complex protein HoxE -
  SYC_RS06545 (syc1236_d) ligA 1347351..1349390 (+) 2040 WP_011243548.1 NAD-dependent DNA ligase LigA -

Sequence

Protein


Download         Length: 421 a.a.        Molecular weight: 45057.29 Da        Isoelectric Point: 5.0318

>NTDB_id=24500 SYC_RS06530 WP_011243545.1 1343850..1345115(+) (cinA) [Synechococcus elongatus PCC 6301]
MSDPRYCAEIISVGTELLLGNILNSNAQFLAEELAQLGIPHYFQTVVGDNRDRLQSAVKIAAERSGLLIFTGGLGPTPDD
LTTETLAACFETHLAERPEVITDIEAKFTRRGRVLTDNNRKQALLPVGAELLPNPSGTAPGMIRSPRSGLTLMTFPGVPA
EMRRMWTETAVPWLHQNDWCRSILVSRLLRFWGISESALAEKVAPFFDLQNPTVAPYANNGEVKLRITAAAASEAEGVAL
IAPIEQELRAIAGRDCYGADNDSLASVVGALLHDRGQTLAVAESCTGGGLGQLITTIPGSSQWFWGGVIAYDNRVKQSLL
NVSAETLAEAGAVSAVVAEQMAIGIQQRLGTTWGVSITGIAGPDGGTETKPVGLVYIGIAGPTGCFGVERRWGAERGRDW
VRRLSAGEALDQLRRSLLNLT

Nucleotide


Download         Length: 1266 bp        

>NTDB_id=24500 SYC_RS06530 WP_011243545.1 1343850..1345115(+) (cinA) [Synechococcus elongatus PCC 6301]
ATGTCTGATCCCCGTTATTGCGCCGAGATTATCAGTGTCGGCACAGAGCTGCTGCTCGGGAACATCCTCAACAGCAATGC
TCAGTTTTTGGCCGAAGAACTGGCACAACTGGGAATTCCTCACTACTTCCAAACCGTGGTGGGCGACAACCGCGATCGCC
TCCAGTCAGCGGTCAAAATCGCGGCGGAGCGATCGGGGCTGCTGATCTTCACAGGGGGGCTAGGGCCAACCCCCGATGAC
CTGACGACGGAAACCCTAGCAGCTTGCTTCGAGACGCACTTGGCTGAACGCCCCGAAGTCATCACTGACATTGAGGCAAA
ATTTACGCGGCGCGGACGGGTCTTGACCGACAACAACCGCAAGCAGGCACTCTTACCGGTTGGAGCCGAATTGCTGCCCA
ATCCCAGCGGTACCGCCCCCGGCATGATCCGGTCGCCGCGATCGGGCCTAACGCTGATGACCTTCCCCGGCGTACCCGCT
GAAATGCGCCGGATGTGGACAGAAACAGCGGTGCCTTGGCTGCACCAAAACGACTGGTGTCGATCGATTCTGGTCAGTCG
TTTGCTGCGTTTTTGGGGCATTTCCGAGTCAGCACTGGCTGAAAAAGTGGCGCCCTTCTTCGACCTGCAAAATCCAACGG
TTGCACCCTACGCTAACAACGGCGAGGTGAAGTTACGGATCACGGCAGCCGCAGCCTCTGAAGCAGAAGGGGTAGCCCTG
ATTGCGCCGATCGAGCAAGAACTGCGGGCGATCGCAGGACGAGATTGCTACGGTGCTGACAACGACAGCTTGGCTTCGGT
GGTCGGTGCGCTCCTGCACGATCGCGGTCAGACTTTGGCCGTCGCAGAATCCTGTACCGGCGGTGGTTTGGGTCAGTTGA
TCACGACAATTCCCGGCAGCTCCCAATGGTTTTGGGGCGGTGTGATCGCCTACGACAACCGTGTGAAACAATCGCTCCTC
AATGTCTCAGCGGAAACTTTGGCTGAAGCAGGGGCGGTCAGCGCAGTCGTCGCAGAACAGATGGCGATCGGCATCCAGCA
GCGCCTAGGGACGACCTGGGGCGTTTCCATCACCGGCATTGCGGGGCCGGATGGTGGCACGGAAACGAAGCCGGTGGGAT
TGGTCTACATCGGTATTGCAGGCCCAACAGGTTGCTTCGGCGTTGAACGGCGCTGGGGCGCTGAGCGCGGGCGTGACTGG
GTCCGGCGCCTGAGTGCGGGTGAAGCACTCGATCAACTGCGGCGATCGCTGCTGAATTTGACCTAA

Domains

Predicted by InterProScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(186-258)

Competence-damaged protein (CinA)

(262-416)

Probable molybdopterin binding domain (MoCF_biosynth)

(9-175)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5N2P7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus pneumoniae TIGR4

40.995

100

0.411
  cinA Streptococcus pneumoniae Rx1

40.521

100

0.406
  cinA Streptococcus pneumoniae R6

40.521

100

0.406
  cinA Streptococcus pneumoniae R36A

40.521

100

0.406
  cinA Streptococcus pneumoniae D39

40.284

100

0.404
  cinA Streptococcus mitis NCTC 12261

40.047

100

0.401
  cinA Streptococcus mitis SK321

39.81

100

0.399
  cinA Bacillus subtilis subsp. subtilis str. 168

43.85

88.836

0.39
  cinA Streptococcus mutans UA159

37.799

99.287

0.375
  cinA Streptococcus suis isolate S10

36.277

99.525

0.361

Multiple sequence alignment